Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Nat Commun
2021 Jun 29;121:4032. doi: 10.1038/s41467-021-24346-8.
Show Gene links
Show Anatomy links
Cnidarian-bilaterian comparison reveals the ancestral regulatory logic of the β-catenin dependent axial patterning.
Lebedeva T
,
Aman AJ
,
Graf T
,
Niedermoser I
,
Zimmermann B
,
Kraus Y
,
Schatka M
,
Demilly A
,
Technau U
,
Genikhovich G
.
???displayArticle.abstract???
In animals, body axis patterning is based on the concentration-dependent interpretation of graded morphogen signals, which enables correct positioning of the anatomical structures. The most ancient axis patterning system acting across animal phyla relies on β-catenin signaling, which directs gastrulation, and patterns the main body axis. However, within Bilateria, the patterning logic varies significantly between protostomes and deuterostomes. To deduce the ancestral principles of β-catenin-dependent axial patterning, we investigate the oral-aboral axis patterning in the sea anemone Nematostella-a member of the bilaterian sister group Cnidaria. Here we elucidate the regulatory logic by which more orally expressed β-catenin targets repress more aborally expressed β-catenin targets, and progressively restrict the initially global, maternally provided aboral identity. Similar regulatory logic of β-catenin-dependent patterning in Nematostella and deuterostomes suggests a common evolutionary origin of these processes and the equivalence of the cnidarian oral-aboral and the bilaterian posterior-anterior body axes.
Amiel,
A bipolar role of the transcription factor ERG for cnidarian germ layer formation and apical domain patterning.
2017, Pubmed
Amiel,
A bipolar role of the transcription factor ERG for cnidarian germ layer formation and apical domain patterning.
2017,
Pubmed
Angerer,
SoxB1 downregulation in vegetal lineages of sea urchin embryos is achieved by both transcriptional repression and selective protein turnover.
2005,
Pubmed
,
Echinobase
Arendt,
From nerve net to nerve ring, nerve cord and brain--evolution of the nervous system.
2016,
Pubmed
Arnold,
Brachyury is a target gene of the Wnt/beta-catenin signaling pathway.
2000,
Pubmed
Charney,
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs.
2017,
Pubmed
Croce,
Frizzled5/8 is required in secondary mesenchyme cells to initiate archenteron invagination during sea urchin development.
2006,
Pubmed
,
Echinobase
Cui,
Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo.
2014,
Pubmed
,
Echinobase
Danecek,
Twelve years of SAMtools and BCFtools.
2021,
Pubmed
Darras,
β-catenin specifies the endomesoderm and defines the posterior organizer of the hemichordate Saccoglossus kowalevskii.
2011,
Pubmed
,
Echinobase
Darras,
Anteroposterior axis patterning by early canonical Wnt signaling during hemichordate development.
2018,
Pubmed
Davidson,
A genomic regulatory network for development.
2002,
Pubmed
,
Echinobase
de-Leon,
Information processing at the foxa node of the sea urchin endomesoderm specification network.
2010,
Pubmed
,
Echinobase
de Mendoza,
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.
2013,
Pubmed
Dobin,
STAR: ultrafast universal RNA-seq aligner.
2013,
Pubmed
DuBuc,
Hox and Wnt pattern the primary body axis of an anthozoan cnidarian before gastrulation.
2018,
Pubmed
Finnerty,
Origins of bilateral symmetry: Hox and dpp expression in a sea anemone.
2004,
Pubmed
Fu,
Asymmetrically expressed axin required for anterior development in Tribolium.
2012,
Pubmed
Gee,
beta-catenin plays a central role in setting up the head organizer in hydra.
2010,
Pubmed
Genikhovich,
On the evolution of bilaterality.
2017,
Pubmed
Genikhovich,
Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.
2015,
Pubmed
Gross,
The role of Brachyury (T) during gastrulation movements in the sea urchin Lytechinus variegatus.
2001,
Pubmed
,
Echinobase
He,
An axial Hox code controls tissue segmentation and body patterning in Nematostella vectensis.
2018,
Pubmed
Helm,
Characterization of differential transcript abundance through time during Nematostella vectensis development.
2013,
Pubmed
Henry,
Beta-catenin is required for the establishment of vegetal embryonic fates in the nemertean, Cerebratulus lacteus.
2008,
Pubmed
Imai,
(beta)-catenin mediates the specification of endoderm cells in ascidian embryos.
2000,
Pubmed
Karabulut,
Electroporation of short hairpin RNAs for rapid and efficient gene knockdown in the starlet sea anemone, Nematostella vectensis.
2019,
Pubmed
Kawai,
Nuclear accumulation of beta-catenin and transcription of downstream genes are regulated by zygotic Wnt5alpha and maternal Dsh in ascidian embryos.
2007,
Pubmed
Khadka,
A novel gene's role in an ancient mechanism: secreted Frizzled-related protein 1 is a critical component in the anterior-posterior Wnt signaling network that governs the establishment of the anterior neuroectoderm in sea urchin embryos.
2018,
Pubmed
,
Echinobase
Kiecker,
A morphogen gradient of Wnt/beta-catenin signalling regulates anteroposterior neural patterning in Xenopus.
2001,
Pubmed
Kraus,
Pre-bilaterian origin of the blastoporal axial organizer.
2016,
Pubmed
Kusserow,
Unexpected complexity of the Wnt gene family in a sea anemone.
2005,
Pubmed
Leclère,
Development of the aboral domain in Nematostella requires β-catenin and the opposing activities of Six3/6 and Frizzled5/8.
2016,
Pubmed
Lee,
Asymmetric developmental potential along the animal-vegetal axis in the anthozoan cnidarian, Nematostella vectensis, is mediated by Dishevelled.
2007,
Pubmed
Leininger,
Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans.
2014,
Pubmed
Li,
Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo.
2014,
Pubmed
,
Echinobase
Liao,
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
2014,
Pubmed
Logan,
Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo.
1999,
Pubmed
,
Echinobase
Love,
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
2014,
Pubmed
Madeira,
The EMBL-EBI search and sequence analysis tools APIs in 2019.
2019,
Pubmed
Marlow,
Ectopic activation of the canonical wnt signaling pathway affects ectodermal patterning along the primary axis during larval development in the anthozoan Nematostella vectensis.
2013,
Pubmed
Martindale,
A developmental perspective: changes in the position of the blastopore during bilaterian evolution.
2009,
Pubmed
Martín-Durán,
The developmental basis for the recurrent evolution of deuterostomy and protostomy.
2016,
Pubmed
McCauley,
Dose-dependent nuclear β-catenin response segregates endomesoderm along the sea star primary axis.
2015,
Pubmed
,
Echinobase
McGregor,
Wnt8 is required for growth-zone establishment and development of opisthosomal segments in a spider.
2008,
Pubmed
Niehrs,
On growth and form: a Cartesian coordinate system of Wnt and BMP signaling specifies bilaterian body axes.
2010,
Pubmed
Nielsen,
Evolution of the bilaterian mouth and anus.
2018,
Pubmed
Nordström,
Progressive induction of caudal neural character by graded Wnt signaling.
2002,
Pubmed
Pang,
Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi.
2010,
Pubmed
Peng,
Differential regulation of disheveled in a novel vegetal cortical domain in sea urchin eggs and embryos: implications for the localized activation of canonical Wnt signaling.
2013,
Pubmed
,
Echinobase
Peter,
A gene regulatory network controlling the embryonic specification of endoderm.
2011,
Pubmed
,
Echinobase
Prühs,
The Roles of the Wnt-Antagonists Axin and Lrp4 during Embryogenesis of the Red Flour Beetle Tribolium castaneum.
2017,
Pubmed
Pukhlyakova,
β-Catenin-dependent mechanotransduction dates back to the common ancestor of Cnidaria and Bilateria.
2018,
Pubmed
Putnam,
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
2007,
Pubmed
Range,
Integration of canonical and noncanonical Wnt signaling pathways patterns the neuroectoderm along the anterior-posterior axis of sea urchin embryos.
2013,
Pubmed
,
Echinobase
Renfer,
A muscle-specific transgenic reporter line of the sea anemone, Nematostella vectensis.
2010,
Pubmed
Saina,
BMPs and chordin regulate patterning of the directive axis in a sea anemone.
2009,
Pubmed
Shih,
SoxB1 transcription factors restrict organizer gene expression by repressing multiple events downstream of Wnt signalling.
2010,
Pubmed
Simion,
A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals.
2017,
Pubmed
Sinigaglia,
The bilaterian head patterning gene six3/6 controls aboral domain development in a cnidarian.
2013,
Pubmed
Steinmetz,
Gut-like ectodermal tissue in a sea anemone challenges germ layer homology.
2017,
Pubmed
Vonica,
Zygotic Wnt activity is required for Brachyury expression in the early Xenopus laevis embryo.
2002,
Pubmed
Wikramanayake,
An ancient role for nuclear beta-catenin in the evolution of axial polarity and germ layer segregation.
2003,
Pubmed
Wikramanayake,
beta-Catenin is essential for patterning the maternally specified animal-vegetal axis in the sea urchin embryo.
1998,
Pubmed
,
Echinobase
Yamaguchi,
T (Brachyury) is a direct target of Wnt3a during paraxial mesoderm specification.
1999,
Pubmed