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Int J Mol Sci
2021 Jun 22;2213:. doi: 10.3390/ijms22136674.
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Sub-Chronic Effects of Slight PAH- and PCB-Contaminated Mesocosms in Paracentrotus lividus Lmk: A Multi-Endpoint Approach and De Novo Transcriptomic.
Albarano L
,
Zupo V
,
Caramiello D
,
Toscanesi M
,
Trifuoggi M
,
Guida M
,
Libralato G
,
Costantini M
.
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Sediment pollution is a major issue in coastal areas, potentially endangering human health and the marine environments. We investigated the short-term sublethal effects of sediments contaminated with polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) on the sea urchin Paracentrotus lividus for two months. Spiking occurred at concentrations below threshold limit values permitted by the law (TLVPAHs = 900 µg/L, TLVPCBs = 8 µg/L, Legislative Italian Decree 173/2016). A multi-endpoint approach was adopted, considering both adults (mortality, bioaccumulation and gonadal index) and embryos (embryotoxicity, genotoxicity and de novo transcriptome assembly). The slight concentrations of PAHs and PCBs added to the mesocosms were observed to readily compartmentalize in adults, resulting below the detection limits just one week after their addition. Reconstructed sediment and seawater, as negative controls, did not affect sea urchins. PAH- and PCB-spiked mesocosms were observed to impair P. lividus at various endpoints, including bioaccumulation and embryo development (mainly PAHs) and genotoxicity (PAHs and PCBs). In particular, genotoxicity tests revealed that PAHs and PCBs affected the development of P. lividus embryos deriving from exposed adults. Negative effects were also detected by generating a de novo transcriptome assembly and its annotation, as well as by real-time qPCR performed to identify genes differentially expressed in adults exposed to the two contaminants. The effects on sea urchins (both adults and embryos) at background concentrations of PAHs and PCBs below TLV suggest a need for further investigations on the impact of slight concentrations of such contaminants on marine biota.
Figure 1. Examples of malformations observed in (BâE) p. lividus plutei deriving from adults exposed to PAHs and PCBs and in (F,G) embryos still at the gastrula stage deriving from adults exposed to PCBs in comparison with (A) control embryos deriving from adults reared in a tank with sediment without contaminants. (B) poorly-formed apex; (C) crossed at the apex with wider aperture of the arms; (D) degraded arms; (E) delayed and abnormal body; (F,G) malformed gastrulae.
Figure 2. Percentage of normal plutei and malformed embryos at the pluteus and gastrula stages from sea urchins, deriving from adult sea urchins exposed to sediment contaminated with PAHs (water + sediment + PAHs) and PCBs (water + sediment + PCBs) and in control conditions represented by adults reared in control tanks (water and water + sediment). Data are reported as mean ± standard deviation one-way ANOVA by HolmâSidak test (** p < 0.01, *** p < 0.001).
Figure 3. Venn diagrams considering up-regulated genes and down-regulated genes, comparing the groups âTreated_1 (plutei deriving from adults exposed for two months to sediment contaminated with PAHs) versus Control (plutei from adults sea urchin P. lividus reared for two months in tanks with sediment without contaminants)â, âTreated_2 (plutei deriving from adults exposed for two months to sediment contaminated with PCBSs) versus Controlâ and âTreated_1 versus Treated_2â. PAHs (Treated_1) and PCBs (Treated_2) induced an increase in the expression of 335 (48.5%) and 122 (17.7%) genes, respectively, compared to the Control; they also induced the down-regulation of 114 (18.5%) and 178 (28.9%) genes, respectively. The two contaminants had several common targets (see also Supplementary Tables S12 and S13 for the names of the common genes): (i) for up-regulated genes, 74 common genes (10.7%) comparing the groups âTreated_1 versus Controlâ and âTreated_2 versus Controlâ; 18 common genes (2.6%) comparing the groups âTreated_1 versus Controlâ, âTreated_2 versus Controlâ and âTreated_1 versus Treated_2â; 4 common genes (0.6%) comparing âTreated_1 versus Controlâ and âTreated_1 versus Treated_2â; 62 common genes (9.0%) comparing âTreated_2 versus Controlâ and âTreated_1 versus Treated_2â. (ii) for down-regulated genes, 104 common genes (16.9%) comparing the groups âTreated_1 versus Controlâ and âTreated_2 versus Controlâ; 12 common genes (2.0%) comparing the groups âTreated_1 versus Controlâ, âTreated_2 versus Controlâ and âTreated_1 versus Treated_2â; 4 common genes (0.7%) comparing âTreated_1 versus Controlâ and âTreated_1 versus Treated_2â; 52 common genes (8.5%) comparing âTreated_2 versus Controlâ and âTreated_1 versus Treated_2â.
Figure 4. Overrepresented GO terms of sea urchin plutei after artificial contaminated experiments with PAHs and PCBs in the three major functional categories: Biological Process (black bars), Molecular Function (white bars) and Cellular Component (grey bars), which include all the differentially expressed genes (both up- and down-regulated).
Figure 5. Schematic overview of P. lividus genes affected by artificial contaminated sediment with PAHs and PCBs under analysis. + = up-regulated gene; - = down-regulated gene.
Albarano,
Marine sediment toxicity: A focus on micro- and mesocosms towards remediation.
2020, Pubmed
Albarano,
Marine sediment toxicity: A focus on micro- and mesocosms towards remediation.
2020,
Pubmed
Arienzo,
Contaminants bioaccumulation and pathological assessment in Mytilus galloprovincialis in coastal waters facing the brownfield site of Bagnoli, Italy.
2019,
Pubmed
Arienzo,
Characterization and source apportionment of polycyclic aromatic hydrocarbons (pahs) in the sediments of gulf of Pozzuoli (Campania, Italy).
2017,
Pubmed
Brils,
Sediment monitoring and the European Water Framework Directive.
2008,
Pubmed
Carotenuto,
Assessment of the relative sensitivity of the copepods Acartia tonsa and Acartia clausi exposed to sediment-derived elutriates from the Bagnoli-Coroglio industrial area.
2020,
Pubmed
Conesa,
Blast2GO: A comprehensive suite for functional analysis in plant genomics.
2008,
Pubmed
Coward,
Cloning of a novel phospholipase C-delta isoform from pacific purple sea urchin (Strongylocentrotus purpuratus) gametes and its expression during early embryonic development.
2004,
Pubmed
,
Echinobase
Danis,
Bioaccumulation of PCBs in the cuttlefish Sepia officinalis from seawater, sediment and food pathways.
2005,
Pubmed
Duboc,
Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo.
2010,
Pubmed
,
Echinobase
Duboc,
Left-right asymmetry in the sea urchin embryo is regulated by nodal signaling on the right side.
2005,
Pubmed
,
Echinobase
Duboc,
Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo.
2004,
Pubmed
,
Echinobase
Esposito,
Combined Effects of Diatom-Derived Oxylipins on the Sea Urchin Paracentrotus lividus.
2020,
Pubmed
,
Echinobase
Grabherr,
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
2011,
Pubmed
Howell,
Concentrations of polychlorinated biphenyls (PCBs) in water, sediment, and aquatic biota in the Houston Ship Channel, Texas.
2008,
Pubmed
Lebesgue,
Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: A quantitative proteomics approach.
2016,
Pubmed
,
Echinobase
Libralato,
Toxicity of untreated wood leachates towards two saltwater organisms (Crassostrea gigas and Artemia franciscana).
2007,
Pubmed
Liu,
Impacts of farmed fish consumption and food trade on methylmercury exposure in China.
2018,
Pubmed
Lofrano,
Metals and tributyltin sediment contamination along the Southeastern Tyrrhenian Sea coast.
2016,
Pubmed
Love,
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
2014,
Pubmed
Marrone,
Defensome against toxic diatom aldehydes in the sea urchin Paracentrotus lividus.
2012,
Pubmed
,
Echinobase
McCauley,
Expression of wnt and frizzled genes during early sea star development.
2013,
Pubmed
,
Echinobase
Meador,
Characterizing Crude Oil Toxicity to Early-Life Stage Fish Based On a Complex Mixture: Are We Making Unsupported Assumptions?
2019,
Pubmed
Pillai,
Polycyclic aromatic hydrocarbons disrupt axial development in sea urchin embryos through a beta-catenin dependent pathway.
2003,
Pubmed
,
Echinobase
Pougnet,
Sources and historical record of tin and butyl-tin species in a Mediterranean bay (Toulon Bay, France).
2014,
Pubmed
Qu,
Polycyclic aromatic hydrocarbons in the sediments of the Gulfs of Naples and Salerno, Southern Italy: Status, sources and ecological risk.
2018,
Pubmed
Robert,
A comprehensive survey of wnt and frizzled expression in the sea urchin Paracentrotus lividus.
2014,
Pubmed
,
Echinobase
Romano,
Nitric oxide mediates the stress response induced by diatom aldehydes in the sea urchin Paracentrotus lividus.
2011,
Pubmed
,
Echinobase
Rongish,
Fertilization-induced activation of phospholipase C in the sea urchin egg.
1999,
Pubmed
,
Echinobase
Ruocco,
Noxious effects of the benthic diatoms Cocconeis scutellum and Diploneis sp. on sea urchin development: Morphological and de novo transcriptomic analysis.
2019,
Pubmed
,
Echinobase
Ruocco,
New inter-correlated genes targeted by diatom-derived polyunsaturated aldehydes in the sea urchin Paracentrotus lividus.
2017,
Pubmed
,
Echinobase
Ruocco,
Morphological and molecular responses of the sea urchin Paracentrotus lividus to highly contaminated marine sediments: The case study of Bagnoli-Coroglio brownfield (Mediterranean Sea).
2020,
Pubmed
,
Echinobase
Ruocco,
High-quality RNA extraction from the sea urchin Paracentrotus lividus embryos.
2017,
Pubmed
,
Echinobase
Ruocco,
Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis.
2018,
Pubmed
,
Echinobase
Shearer,
Role of phospholipase Cgamma at fertilization and during mitosis in sea urchin eggs and embryos.
1999,
Pubmed
,
Echinobase
Suzuki,
Monohydroxylated polycyclic aromatic hydrocarbons influence spicule formation in the early development of sea urchins (Hemicentrotus pulcherrimus).
2015,
Pubmed
,
Echinobase
Varrella,
Toxic Diatom Aldehydes Affect Defence Gene Networks in Sea Urchins.
2016,
Pubmed
,
Echinobase
Varrella,
Molecular response to toxic diatom-derived aldehydes in the sea urchin Paracentrotus lividus.
2014,
Pubmed
,
Echinobase
Varrella,
First Morphological and Molecular Evidence of the Negative Impact of Diatom-Derived Hydroxyacids on the Sea Urchin Paracentrotus lividus.
2016,
Pubmed
,
Echinobase
Yaguchi,
A Wnt-FoxQ2-nodal pathway links primary and secondary axis specification in sea urchin embryos.
2008,
Pubmed
,
Echinobase
Zeng,
Toxic effects of polychlorinated biphenyl bioaccumulation in sea urchins exposed to contaminated sediments.
2003,
Pubmed
,
Echinobase
Zito,
Pl-nectin, a discoidin family member, is a ligand for betaC integrins in the sea urchin embryo.
2010,
Pubmed
,
Echinobase
Zupo,
Mercury accumulation in freshwater and marine fish from the wild and from aquaculture ponds.
2019,
Pubmed