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Braz J Microbiol
2019 Oct 01;504:1051-1062. doi: 10.1007/s42770-019-00143-w.
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First report of cis-1,4-polyisoprene degradation by Gordonia paraffinivorans.
Braga SP
,
Dos Santos AP
,
Paganini T
,
Barbosa D
,
Epamino GWC
,
Morais C
,
Martins LF
,
Silva AM
,
Setubal JC
,
Vallim MA
,
Pascon RC
.
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The use of rubber has increased over the years, leading to a series of environmental problems due to its indefinite decomposition time. Bioremediation employing microorganisms have drawn an increasing interest and originated several studies of microbial rubber degradation. Genome sequencing and in silico analysis demonstrated that G. paraffinivorans MTZ041 isolate encodes the lcp gene (Latex Clearing Protein), responsible for expressing an enzyme that performs the first step in the assimilation of synthetic and natural rubber. Growth curves and scanning electron microscopy (SEM) were conducted for MTZ041 in natural (NR) and synthetic rubber (IR) as sole carbon source during 11 weeks. After 80 days, robust growth was observed and SEM analysis revealed the presence of bacilli and the formation of biofilm-like structures on natural and synthetic rubber. This is the first report of a G. paraffinivorans rubber degrader. Given the complexity of this substrate and the relative small number of microorganisms with this ability, the description and characterization of MTZ041 is of great importance on bioremediation processes of rubber products.
2016/14542-8 Fundação de Amparo à Pesquisa do Estado de São Paulo, 2011/50870-6 Fundação de Amparo à Pesquisa do Estado de São Paulo, 2016/07360-0 Fundação de Amparo à Pesquisa do Estado de São Paulo, 3385/2013 Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
Altschul,
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
1997, Pubmed
Altschul,
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
1997,
Pubmed
Antunes,
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics.
2016,
Pubmed
Arenskötter,
Biology of the metabolically diverse genus Gordonia.
2004,
Pubmed
Assefa,
ABACAS: algorithm-based automatic contiguation of assembled sequences.
2009,
Pubmed
Berekaa,
Effect of pretreatment of rubber material on its biodegradability by various rubber degrading bacteria.
2000,
Pubmed
Birke,
Rhizobacter gummiphilus NS21 has two rubber oxygenases (RoxA and RoxB) acting synergistically in rubber utilisation.
2018,
Pubmed
Birke,
RoxB Is a Novel Type of Rubber Oxygenase That Combines Properties of Rubber Oxygenase RoxA and Latex Clearing Protein (Lcp).
2017,
Pubmed
Braaz,
Novel type of heme-dependent oxygenase catalyzes oxidative cleavage of rubber (poly-cis-1,4-isoprene).
2004,
Pubmed
Bröker,
The genomes of the non-clearing-zone-forming and natural-rubber- degrading species Gordonia polyisoprenivorans and Gordonia westfalica harbor genes expressing Lcp activity in Streptomyces strains.
2008,
Pubmed
Chevreux,
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.
2004,
Pubmed
Drzyzga,
The strengths and weaknesses of Gordonia: a review of an emerging genus with increasing biotechnological potential.
2012,
Pubmed
Flemming,
The biofilm matrix.
2010,
Pubmed
Flemming,
The EPS matrix: the "house of biofilm cells".
2007,
Pubmed
Fujii,
Biotransformation of various alkanes using the Escherichia coli expressing an alkane hydroxylase system from Gordonia sp. TF6.
2004,
Pubmed
Heisey,
Isolation of microorganisms able to metabolize purified natural rubber.
1995,
Pubmed
Hiessl,
Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2.
2012,
Pubmed
Ibrahim,
Identification of poly(cis-1,4-Isoprene) degradation intermediates during growth of moderately thermophilic actinomycetes on rubber and cloning of a functional lcp homologue from Nocardia farcinica strain E1.
2006,
Pubmed
Imai,
Rhizobacter gummiphilus sp. nov., a rubber-degrading bacterium isolated from the soil of a botanical garden in Japan.
2013,
Pubmed
Jendrossek,
Bacterial degradation of natural rubber: a privilege of actinomycetes?
1997,
Pubmed
Jendrossek,
Rubber oxygenases.
2019,
Pubmed
Kasai,
Identification of natural rubber degradation gene in Rhizobacter gummiphilus NS21.
2017,
Pubmed
Lemos,
Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting.
2017,
Pubmed
Linh,
Characterization and functional expression of a rubber degradation gene of a Nocardia degrader from a rubber-processing factory.
2017,
Pubmed
Linh,
Complete genome sequence of natural rubber-degrading, gram-negative bacterium, Rhizobacter gummiphilus strain NS21T.
2019,
Pubmed
Linos,
Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre.
1999,
Pubmed
Linos,
Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete.
2002,
Pubmed
Linos,
A gram-negative bacterium, identified as Pseudomonas aeruginosa AL98, is a potent degrader of natural rubber and synthetic cis-1, 4-polyisoprene.
2000,
Pubmed
Linos,
Biodegradation of cis-1,4-polyisoprene rubbers by distinct actinomycetes: microbial strategies and detailed surface analysis.
2000,
Pubmed
Livak,
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
2001,
Pubmed
Luo,
Insights into the microbial degradation of rubber and gutta-percha by analysis of the complete genome of Nocardia nova SH22a.
2014,
Pubmed
Martins,
Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms.
2013,
Pubmed
Nanthini,
Identification of three homologous latex-clearing protein (lcp) genes from the genome of Streptomyces sp. strain CFMR 7.
2017,
Pubmed
Nawong,
Rubber gloves biodegradation by a consortium, mixed culture and pure culture isolated from soil samples.
2018,
Pubmed
Pascon,
Amylolytic microorganism from são paulo zoo composting: isolation, identification, and amylase production.
2011,
Pubmed
,
Echinobase
Rose,
Biodegradation of natural rubber and related compounds: recent insights into a hardly understood catabolic capability of microorganisms.
2005,
Pubmed
Rose,
Identification and characterization of genes from Streptomyces sp. strain K30 responsible for clear zone formation on natural rubber latex and poly(cis-1,4-isoprene) rubber degradation.
2005,
Pubmed
Roy,
Comparative studies on crosslinked and uncrosslinked natural rubber biodegradation by Pseudomonas sp.
2006,
Pubmed
Seidel,
Structure of the processive rubber oxygenase RoxA from Xanthomonas sp.
2013,
Pubmed
Sharma,
Metabolic and taxonomic insights into the Gram-negative natural rubber degrading bacterium Steroidobacter cummioxidans sp. nov., strain 35Y.
2018,
Pubmed
Sowani,
An insight into the ecology, diversity and adaptations of Gordonia species.
2018,
Pubmed
Tsuchii,
Rubber-degrading enzyme from a bacterial culture.
1990,
Pubmed
Tsuchii,
Microbial degradation of natural rubber vulcanizates.
1985,
Pubmed
Warneke,
Bacterial degradation of poly(trans-1,4-isoprene) (gutta percha).
2007,
Pubmed
Watcharakul,
Biochemical and spectroscopic characterization of purified Latex Clearing Protein (Lcp) from newly isolated rubber degrading Rhodococcus rhodochrous strain RPK1 reveals novel properties of Lcp.
2016,
Pubmed
Xue,
Gordonia paraffinivorans sp. nov., a hydrocarbon-degrading actinomycete isolated from an oil-producing well.
2003,
Pubmed
Yikmis,
Secretion and transcriptional regulation of the latex-clearing protein, Lcp, by the rubber-degrading bacterium Streptomyces sp. strain K30.
2008,
Pubmed
van Beilen,
Establishment of new crops for the production of natural rubber.
2007,
Pubmed
van Beilen,
Prospects for biopolymer production in plants.
2007,
Pubmed