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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
5.0
A. planci
1.0
A. japonica
1.0
Genomes
S. purpuratus
5.0
S. purpuratus
4.2
S. purpuratus
3.1
A. planci
1.0
A. japonica
1.0
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 2.0 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>PREDICTED: Acanthaster planci 4-hydroxyphenylpyruvate dioxygenase-like (LOC110987059), mRNA CACCAGCAGAGGGGCTAGCGCTGACTGCGCCGGTTGGCCACATCACACGAAGTCGATGCGTCGTGTAACGATCACCGGTGATTCACAACCAGAATGACTACATACACGAACAAGGGCCCGAAGCCTGAGAAAGGACGTTTCATAGCATTTGATCACCTGACATTCTGGGTTGGAAATGCTAAACAGGCAGCCTCGTACTATTGTACTCGTATGGGGTTCCAACCCTATGCCTACAAGGGCTTGGAAACAGGAAGCAGGGAAGTGGTTTCGCATGCTGTCAAACAAGACAAGATCATATTTGTTTTCCAATCACCATTGAACCCATCGGGAAAAACAACCGAGGAGATGGGTAGGCACCTGACTCTGCATGGTGATGGTGTGAAAGACATTGCCTTCGAAGTGGAAGACCTTATATCCATCTACAAGAAAGCAGTTGAACGAGGTGCCACCAGTGTCAAGGAACCATGGGAGGAGTTTGATGAAGATGGCTCTGTCATGTTTGCCCAGATCCAAACGTACGGGGATACTACTCATACATTTGTGGAGAGACGCAATTACCAGGGCCTATTTTTGCCAGGATACAAGCCAGCCATGTATAAGGATCCTCTTGTGAACCTCTTGCCTCCTGGTAAATTGAAATTTGTTGATCACGTGGTTGGAAACCAGCCAGAAGATGACATGGAGACAGTTGCTGAGTGGTATGAGAAAAACCTGATTTTCCATCGCTTCTGGTCAGTAGATGATAAACAGATTCACACCGAGTTCAGTGCACTGCGATCTATTGTTGTCACCAACTATGAGGAGACAATCAAGATGCCGATCAACGAACCTGCAAACGGCAAACGAAAGAGCCAAATCCAGGAGTACGTGGACTTCTATGGAACTGCAGGAGTCCAGCACATTGCTATGAACACAGACAACATCATTGATGCTGTTGGCAACCTCAAGGCCAGAGGCCAGGAATTCTTGACCATACCTTCCACCTATTATAAGAACCTGAGGGAGCGGCTCAAGTCGGCCAAGATAAAAGTCACGGAGGACCTGGACGTGATTGAGAAGCTGAACATCCTGATTGACTTTGACCAGGAAGGCTACCTGCTGCAGATATTCACCAAACCTGTCGAGGATCGCCCTACCCTGTTCCTTGAGGTTATTCAACGCCATAACCATCAAGGTTTCGGCGCGGGAAATTTCAAGTCTCTGTTTGAGGCCATTGAGCAGGCCCAGGCAGAGAGAGGCAATCTTAACTAATCTTCACATCCTCCTTTAATGGTGGAGAGAACGGAAACTGCACGGAAACCTGCCACCATACCCAGGCTGTGACACATTTGGAGGATATGCATATTAGGTAGATCTGACCCAGTCCACAGTCCGCCTAAATCCTTACCATCAAAAATTGAAGCTTACCTCCTCATAAACACACTGAGTGTCACTTGAGAGGTAACATTTGCAGAAGTTGTGTTACAGAAGTAGTCTTGTTTGCATTGGGAGCTTGACCAGTCTTCAAAGTCTGCTGAGTGTGGACCGGTGGAGTCTAGTTGAGTAATGTTATCTGGAGTTTCTTCTTAGAGAGCGAATATGCACACTCCAGAGAATTTTTCTATTTTGGATGAGGTCAACCATTGTGGTGGCATAACTAATCTGTTTCCCCACCAGCATTTACAGGACATCAAAGCACTCCAGAATAACAGTAACCACAACAGAATCTAATTTTTTAGTTTGAAGATAGAGTCTTTAATTTCCCCATTGTCTGTTTCTGTTTTAAGTATACTTCACAGTAGGGATTTTTTGGGTTGGCTTAATTATGTCACCAGCTTTTTTTTTTTGTCTTGGACCCTTGCTTTGTTCGAAATTCAAATATACAAATCCTTATTAACTTTTATTGTTCTAAGTATCATTGCCAAAGGTTTTGCTTCATTTTAATGCCATTTAATTATTGCCTATCCCAATTTTAACACTGTCACTGTTAATGATGAATCTGTGTCATAGACACATATAATAAAGGCTCTAAGGCCCACTTCAAATGTCAAACTTCTGCTGTTTCTAATTTGCAATTGACATAAAAGCAAAAAAGTTCTGCAGTGGCTTTAAACATCTATTTACTCTTGAATGTAAGGCAGTCTTTAAGCATGATGCACCAGGGAAGAAGACAAGATATTTCGTTTTTCTGTGATCAAATTTACAGGGTTCTTGTGGCCCGGAAAAGTCATGAAAAAGTCATGAAAATTTGTTTTCATTTTCCAGGCCTGGACAAGTCATGGAATTTTGTCATAATGACTAAAGTGATGGAATTTTTCAAACACTGTGTGTGATTCCTGTTATCAGAAACAAGTGCGTAAAATGAGAAATTTTTCTTTTTAACTTTAGAAGTTCAACTAGTCCAAAAAATTGCATTATTGGATCATGGATTTATATAATTTGGTCATGGAAAAGTCACGGAATTTAATTATCCTTCTGGTGCAGGAACCCTGAATTTATTGAAGGTGATATTAAGAGAGTTTTGATTATCCTTTCAAAACTCCTGCTGCACCTTTCAAGAGAAAATTTCACAATCTCCAATGATCTTGTCGGATTGACATTTGGTCAAAGATGTAAGTTGGCCAGAAGTATAATTCTGAATGCGAATTCAGAGAAAATGATGATTCATAAACTGACCTTGGCAATGTTCCTTTCTCACATTAGACAAGATTAGAGTGAAACACTTACATAAATCCCCATCTCCAAGGCATTGGTCGGGATATGCTTGTGAAGATTCTCCAGTGGAGATTGTAATCGTGCTGTTGCCGAAAACTGACCAATATTGTTGGTGAAGTTTGAAAAAGTTTGTGAATCCATCATCAGAAATTTGTTGGGTGTGTCAGTCACTAGCAGGGTTTTCCAAAAACCAAAGACTAAAATATTATATATTGGTTTTAATGCTGAACTGAATTGGAGTGGGTGCATGCACATTTTCAAATGGTCCCAGTACAATTCTGACTTGGGACATGCCAATTGCATCAGACACCGCAGATACCCAACGTTTGAAGCCATGCTGCTCTTCTGCCGTTAAACCAGCAAGACCTGGCAAACTTCAGCAGACAGTCAGCAGTTGCTTTAAACGTCGACTTTCTACCGTGTCTAATTCAAATTCTGCACCATTTGAATGAGACATGGCAGAAATTTGACATTTGAAGTGGGCCTAAGAATCCCTGAACCTAATTCTGAATGGAATTATTTTAGTAAATATCTGGCATAACAGGGCAATGAAGGAATGAGAATTGAGTGCAATGTAAGTTGGAGAAGAATGCTCTATATAATGTTTAATACAGTGTACAATGTTGACTGCACTGTGAAATGCCAGATGGACTTGTATGTAATGTACCACCAGGTGACATAGGAGTTCCAAGGAAGGTGTGGGGGATTTACCCATCCCCCTCCAACATATGGCACAAAACATAGCTAATGGGGGTTGGTCACAGATGGAGTGTTTTCTGGAGGGCAATAAGTTAAATGCTTTATACTTGGGAATAGGCTTTGAGGCAGTAGTTTCAATGAAACAGTAGAGCACTTTGTGTTCTGACAAAGGTTTAGTTCCCTTTTGCAGTTCAAAGTGGATGGAATAAATTTGGCCTGGCCAGTTTTGACCTTGAAGCGGACGCTGATTCTCATTTCAAAATAGAAATCACTTCTCGGGTTGCATTGCATTTATAGCCTTCACACTGGTACACAGTGAAGGTCAGGCTATGGAGTGTTCAAGACATGGCTAATGTGATGTACGTACAGTGTTCTTCCAGTTGATTGTGTTTGTATCACATATTATGTTTGGGGTGTCCCAAAAAGGAAACCTAGTTATCATTTACCTTTCAGGACACCCCATATAGACTTTGTGCCCACAGTACATCAGTCCATGGTGCAGAAACCATGTACACTTTAAGTCTTATCCCAGTGTGACTAGGAGTGTTTAAGTACTGTTCACATCATGAGCATTTGAACAGCAGTACAATAATTTTATGAAATGTGAATGGGTGGCCACTTCTAATTCCTTGTAGCTTTTTATTACATGTAGTGGGCCCTTTCTGTGAGTTGTACCTCCCACCAATCTTCCCTGTGAGTGAAAAGCTTGAAATTATATTTCAGATCCATGGAGTTTTATTCTGTTTGTAGTTGTCTTTGGTTTTTTTTCTGTAAAAGGGAAGAGTTTTGCACCTGGTGGTTGTGGATTACAGGATTTTATTTCAACAGGGAAATCAAATAGTTTTACACTGTGAGAATCAGCTCTGCGTTCTGGTACATTATTGTTATTATTACTATTAATATTAATGGCATGTTATTTTCGAATTTTGTTTGGGTAGGTCACCAAGGTTCTATAAACCACAAATGCATATATGACTTTTCTTTGACTGTGTTCAGATAAATTGATGATAAATATTGCCATAATAATGTACATGTTACAATTACACAGAAATCAGTGTATCTAAGTCTTGCAGCATGAACTAAGAATGGTTTTCTTTGTTTATTCCATATTGAATTTACTGTGCATGTTCTCTTTCAGCACTTCCACTGATGTGTCAAAATGAATGTAATACAGAGTTTAGACTTGCTTATCTTATTTTTTAATGAAAGCAGTTACAGGATGAGTTATACTTACTTCTTGTTCTGAATACCGTATGCTTAACAGAAAGGCTATAATCATGTTTAAGCTATGCTTGTTTCATTGCTGCCAAGTCAGTGAGACTTAAATTCAAACCTTTTGATACAAATTCATTCAAACTTCTCACGTGGCAATGCTGGATATAAAAATAATCTGCTTGTGGTGTGCATTCCCAACATTATTTTAGAAAAACAATGGATGAAAACAGAAAAAAAAACAGATGCAGTAGACAAAATAGAAAATTGGGATTTGATCCTTGGCATATTGCAGGTGTTATTTACATACCATCAATAGTGTGAATGGTATTCTCATCTCAAAAGTTGCTGGTACCTTATTCTGCTTGCAAATATGTGGGCTGGTAATTTTCCCCCAAATGAGTGGTAGTTTGAAGTTGAATATATTATTCTAGATGCAAGTTCGTGTGGACGCAAACCAATAAAGGCTTAAAGTCGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
