Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030998655.1 PREDICTED: Strongylocentrotus purpuratus RNA helicase aquarius (LOC577627), transcript variant X3, mRNA GATTCGCGTCGTTTGGTAAACGAATTAAGATGGCGGCGACCATGGACATGTGAATCGTATTCCGACAAAA AAGTCTAATTTCAGAAAGCATATTAAGGTTGGGAATTCGAAGCTTGTCTATCAGTTTCACGTTGGAAAGT GAAACAAGTATTTAATGGTGATTGAAGATGTCTACAAGAAAGAACTCCTGAAGAACAAGTTTGCTGTACG TCGTATCATGGTGCTTGAGTTCAGCCAATACCTGGAAAACTACCTGTGGCCAAACTATGACTCTGAAAAG TCCACCTCCAGTCATCTGATCTCTATTGCTGTCATGATCAATGAGAAATTCAGAGAAGGAGTGTCAGCTT GGGAGGCATGCAAGAAAAAACCTGAGCAGTTTCCAGCTTTCTTCCGTCAAGTTCTAGAGCTTACTTTGGG TTCGTTAAAGGATCAGACAATCTCACTGAGAGAACGGACAGTGCTTCTCATCTTCCTCATTCACTGCTTT AACAGTCTGGAAGTGGATGTAATACGAGAGCAAGTCCAGAGGCTTGTATCCCTACCCATGTGGGTGTGTC TCCTACCGGGAAGGCTTGAAGCTGAGCTGAAGGCCTACCCCAAATACAAGAAGTTCTGGAAGATCATCAT GAAAAATGATGCCAAACTAGATGATGAGACGAAGAAGAGGAACGACTTTGAGCGGAGGTTTCTTGCTAAC TTGATCCAGCTTTTCTATACGATATTGGACTCCATCCAAGAGGAAGGTGATGCTGCAATGGACAAGGTCC ATTTCTGTGAGCGCTTTGTGGAGATGATGGTAGATCTAGAGGCTCAGCTTCCAACGAGGAGGTTCTTCAA TGCTGTCATGGATGACGCCCATGTAGTCGTTCGATGTCGGCTGTCTGCACTAGCAAAGAGGAAGGAAGGC AAGCTGTTCAGTGAGCTATTGGACATGCTGACATTCTATGCTGGATTTGAGATCAAGGATTCCACAGGAA CAGCTCTTACAGACCATGAGATGACTGATATACACTATGATAGGATAAGCTCTCTCCAGAGAGCTGCCTT CAAGCTCTTTCCAGAGCTGAAGAGATTCGCAATGTCAAATGTTGCTAGTATTGATACAAGGAAGACACTC ACCAAGCACTTTACACAACTAAGTGCATCAGACCTGCATCATTTCGCTGCCTTCTTGCATCTGCTGCCCC CACTTGGTGATGATGAGGAAACCACAGTAGAGAAGACATTCCTTTTAGATCTCATGGTTTCCCATCACGA GAGAAGGATCTCTCAAATCCAATCATTGAATGAGACACCTCTCTACCCGACAGAAGAGATTCTTTGGGAT GAGAATGTGGTTCCTACTGAGTACTACTCTGGGGAAGGTTGCCTTGCCCTTCCGAAGCTGAATCTTCAGA TGCTCACTCTCCATGACTACCTGCTAAGAAACTTTCATCTCTTCAGACTAGAATCCACATATGAGATTCG ACAAGATGTAGAGGATGCAGTGCTGAGAATGAAGCCCTGGAAGGCTGAAGATGGTAGCTGCTTCTTTGGA GGATGGGCACGTATGGCACAGGCAATTACATCGTTCTCGGTAGTTGAGGTTTCTAAACCCAACATTGGTG AGAACCACCCAGGCAGCGTGAGAGCTGATATCACCTTGACCCTAAACCTCCGTCAACATATCAAGTCAGA GTGGGAATCACTGAGGAAGCATGATGTAGCCTTCCTTGTCACGGTCCGACCAACCAAGAGGATTGGTAGC ACCTTCAACAACAACAAGAACAAGAACAACAAGAACAAGGAGGACTTCATTGACCAGGTTGGAATCGCCT ACGTCCGAGGGTGTGAGGTAGAGGGGCTTTTGAATGAAAAGGGAGAAGTGATTGAAGAAGGTCCAGAACC CAAGCCAGATTTTACAGGTATCACCAGGACATACAGAGTATGGCTGGACTCTAACCAGTACCAGAAGGAC ATGGCTAAGACAGCGTCTTCTGGGACAGAGGATGTCTATGAGAGCTTCAATATCATGATGAGAAGGAAAC CAAAGGAAAATAACTTCAAAGCTGTACTGGAGACAATCCGTGACCTGATGAACACTGACTGTGTAGTACC TGACTGGCTACATGACATCCTACTGGGGTATGGAGACCCAGGAGCAGCTCACTACTCAAAGATGACCAAG CAGATTGCAACTTTGGACTGGAATGACACCTTCCTGAACGCTGACCATCTCAGGGCTAGCTTCCCAGACC ATTCGGTCAAGTTGATGACAAATGACCCAGCTAAACTAGTGCCTCCTTTTAGGATAACATTTCCAGATGC TGAGAAAGGAGGTTCTTCAGGGAAGAAACGCAAGAATGAGGACACCTCTCAGACGAAAGCCAAGAAAGAA ATCATTGTGGAACCCCACATCATCCCTAACCGAGGCCCTTATCCATACAACCAACCTAAGAAGAATGCAA TCCAGTTTACCCCAACACAAGTAGAAGCCGTCAGAGCTGGCATGCAACCAGGCCTTACAATGGTTGTTGG ACCTCCTGGAACTGGTAAGACAGACGTAGCTGTTCAGATCATCTCCAATATCTATCATAACTTCCCTGAG CAGAGGACCCTCATCGTCACACATTCCAACCAGGCTCTGAACCAGTTGTTTGAGAAGATCATCGCATTGG ATATCGATGAGAGGCATCTGTTGAGGTTGGGTCATGGTGAGGAGGCACTGGAGACAGAAAAAGATTTCAG CAGGTACGGTCGTGTGAACTATGTGCTTGGTCGTCGCCTGGAGCTGCTCAAGGAGGTGGAGAGGTTACAG GAGAGTCTTGGAGTTCCTGGTGATGTGTCATACACCTGTGAGACAGCCGGTCACTTCTATCTCTATCAGG TGGTGGCACGTTGGGAGAAGTTCCTGAGTAAGGTGAAGCCTAAGGGTGGTAAGGAGGTTGCGGTTGAAGA CATTGTCACTCACTTCCCTTTCCATAAATTCTTTGAGAATGCCCCCCAGCCAGTATTCAAAGGGGAGACC TACGTTCAGGACATGGACATTGCAGAGGGCTGCTACCGCCACATCAAGAAGATCTTCCAACAGCTCGAGG AATTCCGAGCATTTGAGCTACTGCGAAGTGGGAAAGACCGGTCCAAGTACCTCCTGATCAAGGAAGCCAA GATCATCGCCATGACGTGTACGCATGCTGCCCTCAAGAGACGAGACTTAGTCGATCTTAGGTTCCAGTAT GATAACATCTTGATGGAGGAATCTGCTCAGATTCTAGAGATTGAAACCTTCATCCCTCTGCTTCTTCAGA ATCCTGAGGATGGTTTCAATCGATTGAAGCGATGGATCATGATCGGTGATCACCATCAGCTTCCACCTGT CATCAAGAACATGGCCTTTCAGAAGTTCTCCAATATGGAGCAATCTCTCTTCACTCGGTTTGTCAGGTTA GGGGTGCCTACCGTAGATCTGGATGCTCAGGGGAGAGCTAAACCAAGCATTGCCACACTGTACAACTGGA GGTATCGTAACCTTGGCAACCTGCCTCACGTGAAGAGGATGCCCGAGTTCCAGACCGTAAACCCTGGCTT GGCCTTTGACTATCAGCTCATCAATGTCGATAACTTCAATGGAGTGGGGGAATCTGAGCCCAATCCTTAC TTCTATCAGAACCTGGCTGAAGCGGAGTACGTGGTGGCGCTCTTTATGTACATGAGGTTGCTAGGATACC CAGCTGAGAAGATCAGCATCCTCACTACATACAACGGTCAGAAGCATCTAATCCGTGATGTCATCAACAA ACGATGCTCGGACAACCCAATAATGGGTCAACCCCACAAGGTGACGACAGTGGATCGTTTCCAGGGGCAA CAGAATGACTACATCCTCCTATCACTAGTCAGGACGAGGGCAGTTGGACACATCAGGGACGTGAGGAGGC TTGTGGTCGCCATGTCCAGAGCCAGACTTGGTCTCTATGTCTTTGGCAGGGTTTCCCTCTTCCAGAACTG CTATGAGCTATCACCAACATTCCGAAACCTGATGTCAAGACCGATTCATCTTCATCTAGTTCCATCTGAG ACATACCCACCACAGAGAAAGATCGGCCAGCCTCCACATGGTGGTGCCATGGTGATAGAAGACATGGCTC ACATGGCTGGGTTTGTCTATGAGATGTACAATGACCGCATGCAGAGGATGCATGCACAGATAGGGCGCCA AAGAAGAATAGAACGTCTAGCCAAACCTCCAGTGTCTCACAAACCCCCTGGGTCTCACAAACCCCCTGCA AAGAAAGTGGAAGAACCCATGGAGACTGAACCTGTTGAAGAAGCCAATAAGGAGGTGGCAGACGCAAAGG AGGAAGAGGTGGACCATTCCAAGATGCCAGAACATCCGGGGGAGAGCAGTAGTGAATCAGAGGGAGAAGA TGATAAGGAGACGCAAGTAATGCAGGGGCAGGCAGAGAAAACGAAGGGAAATGATGATGAGGATAAGGAG ACACAAGACATACAAGGGCAGGCTGTGGCAGAAACAACAGTGGAGAAGGCAAAATCAGATGAGACTGAAA AGATGGAAGAAACTTAACAGCTTGTGAAACTCGAGACATTCAGTGGGATGCAGCATGGATAGACCACAAG AAGAACAATAAATATCAACTTGTTGCTGGTTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds