Echinobase Data Downloads

Echinobase data downloads provide access to genomes, database content, and more. Most files are in a tab delimited format. Click the "readme" link to view information on the files, including the header row for these files. To download a file, click on the corresponding link on the far right side. More files are located at our FTP File Browser. If you have any questions about the content of the files, or would like a custom Data Report generated, please contact us

Genomics

Genomes

S. purpuratus genome assemblies and gene models

• S. purpuratus v5.0 genome assembly [readme] FASTA
  
  Gene Model(s):
  • S. purpuratus v5.0[readme] gene models (gff3)transcripts (FASTA)peptides (FASTA)CDS (FASTA)
  • For the latest versions browse theEchinobase FTP site
• S. purpuratus v3.1 genome assembly [readme] FASTA
  
  Gene Model(s):
  • S. purpuratus v3.1 [readme] gene models (gff3)transcripts (FASTA)peptides (FASTA)CDS (FASTA)

P. miniata genome assemblies and gene models

• P. miniata v3.0 genome assembly [readme] FASTA
  
  Gene Model(s):
  • P. miniata v3.0 [readme] gene models (gff3) transcripts (FASTA) peptides (FASTA) CDS (FASTA)

L. variegatus genome assemblies and gene models

• L. variegatus v3.0 genome assembly [readme] FASTA
  
  Gene Model(s):
  • L. variegatus v3.0 [readme] gene models (gff3) transcripts (FASTA) peptides (FASTA) CDS (FASTA)

A. planci genome assemblies and gene models

• A. planci v1.0 genome assembly [readme] FASTA
  
  Gene Model(s):
  • A. planci v1.0 [readme] gene models (gff3) transcripts (FASTA) peptides (FASTA) CDS (FASTA)
  • For the latest versions browse theEchinobase FTP site

A. japonica genome assemblies and gene models

• A. japonica v1.0 genome assembly [readme] FASTA
  
  Gene Model(s):
  • A. japonica v1.0 [readme] gene models (gff3) transcripts (FASTA) peptides (FASTA) CDS (FASTA)

A. rubens genome assemblies and gene models

• A. rubens v1.3 genome assembly [readme] FASTA
  
  Gene Model(s):
  • A. rubens v1.3 [readme] gene models (gff3) transcripts (FASTA) peptides (FASTA) CDS (FASTA)

Sequences

Echinoderms

• Echinoderm mRNA [readme] FASTA
• Echinoderm CDS [readme] FASTA
• Echinoderm protein [readme] FASTA

BLAST databases

S. purpuratus

• S. purpuratus 5.0 genomeBLAST DB files (tar.gz)
• S. purpuratus 5.0 mRNABLAST DB files (tar.gz)
• S. purpuratus 5.0 CDSBLAST DB files (tar.gz)
• S. purpuratus 5.0 proteinBLAST DB files (tar.gz)
• S. purpuratus 3.1 genomeBLAST DB files (tar.gz)
• S. purpuratus 3.1 mRNABLAST DB files (tar.gz)
• S. purpuratus 3.1 CDSBLAST DB files (tar.gz)
• S. purpuratus 3.1 proteinBLAST DB files (tar.gz)

P. miniata

• P. miniata 3.0 genomeBLAST DB files (tar.gz)
• P. miniata 3.0 mRNABLAST DB files (tar.gz)
• P. miniata 3.0 CDSBLAST DB files (tar.gz)
• P. miniata 3.0 proteinBLAST DB files (tar.gz)

L. variegatus

• L. variegatus 3.0 genomeBLAST DB files (tar.gz)
• L. variegatus 3.0 mRNABLAST DB files (tar.gz)
• L. variegatus 3.0 CDSBLAST DB files (tar.gz)
• L. variegatus 3.0 proteinBLAST DB files (tar.gz)

A. planci

• A. planci 1.0 genomeBLAST DB files (tar.gz)
• A. planci 1.0 mRNABLAST DB files (tar.gz)
• A. planci 1.0 CDSBLAST DB files (tar.gz)
• A. planci 1.0 proteinBLAST DB files (tar.gz)

Echinobase Data Reports

Echinobase data reports are updated weekly.

Gene Information

• Echinobase Gene Information [readme] txt (tab separated)
• Echinobase Genes to Genepages [readme] txt (tab separated)
• Genes Associated with Literature [readme] txt (tab separated)