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Echinobase
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ECB-MORPHOLINO-24506294
Morpholino Name: msx1 MO3
Synonyms: msx Mo1
Target mRNA: msx1

Morpholino Type: translation blocking morpholino
Sequence: 5' CGACTTGATGGAAGAAAATTATTCC 3'

Source: Gene Tools LLC


Target mRNA S. purpuratus A. planci P. miniata L. variegatus
Identities 22/25
genomic

MO		 5' GGAATAATTTTCTTCTATCGAATCG 3' ||||||||||||||| ||| | ||| 3' CCTTATTAAAAGAAGGTAGTTCAGC 5'
Genomic Alignments Position Identity Strand Target Target mRNA
S. purpuratus 5.0 NW_022145600.1:17807943..17807967 22/25 Antisense target msx1
NW_022145520.1:437806..437830 21/25 Sense off-target plod1
NW_022145601.1:17445734..17445758 21/25 Sense off-target LOC576306
NW_022145598.1:30364404..30364428 21/25 Sense off-target LOC105446871
NW_022145603.1:16678808..16678832 21/25 Sense off-target LOC105446334
NW_022145598.1:2897692..2897716 21/25 unknown
Publications
First: Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm., PLoS Genet 2010                        
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