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Proc Natl Acad Sci U S A
2012 Jul 03;10927:10915-20. doi: 10.1073/pnas.1202768109.
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Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos.
Ochiai H
,
Sakamoto N
,
Fujita K
,
Nishikawa M
,
Suzuki K
,
Matsuura S
,
Miyamoto T
,
Sakuma T
,
Shibata T
,
Yamamoto T
.
Abstract
To understand complex biological systems, such as the development of multicellular organisms, it is important to characterize the gene expression dynamics. However, there is currently no universal technique for targeted insertion of reporter genes and quantitative imaging in multicellular model systems. Recently, genome editing using zinc-finger nucleases (ZFNs) has been reported in several models. ZFNs consist of a zinc-finger DNA-binding array with the nuclease domain of the restriction enzyme FokI and facilitate targeted transgene insertion. In this study, we successfully inserted a GFP reporter cassette into the HpEts1 gene locus of the sea urchin, Hemicentrotus pulcherrimus. We achieved this insertion by injecting eggs with a pair of ZFNs for HpEts1 with a targeting donor construct that contained ∼1-kb homology arms and a 2A-histone H2B-GFP cassette. We increased the efficiency of the ZFN-mediated targeted transgene insertion by in situ linearization of the targeting donor construct and cointroduction of an mRNA for a dominant-negative form of HpLig4, which encodes the H. pulcherrimus homolog of DNA ligase IV required for error-prone nonhomologous end joining. We measured the fluorescence intensity of GFP at the single-cell level in living embryos during development and found that there was variation in HpEts1 expression among the primary mesenchyme cells. These findings demonstrate the feasibility of ZFN-mediated targeted transgene insertion to enable quantification of the expression levels of endogenous genes during development in living sea urchin embryos.
Beumer,
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Beumer,
Efficient gene targeting in Drosophila with zinc-finger nucleases.
2006,
Pubmed
Beumer,
Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.
2009,
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Bulger,
Functional and mechanistic diversity of distal transcription enhancers.
2011,
Pubmed
Cohen,
Dynamic proteomics of individual cancer cells in response to a drug.
2008,
Pubmed
Damle,
Confocal quantification of cis-regulatory reporter gene expression in living sea urchin.
2007,
Pubmed
,
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Doyon,
Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases.
2008,
Pubmed
Elowitz,
Stochastic gene expression in a single cell.
2002,
Pubmed
Fuchikami,
T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo.
2002,
Pubmed
,
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Gabriel,
An unbiased genome-wide analysis of zinc-finger nuclease specificity.
2012,
Pubmed
Gupta,
Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases.
2011,
Pubmed
Hockemeyer,
Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases.
2009,
Pubmed
Hough-Evans,
Mosaic incorporation and regulated expression of an exogenous gene in the sea urchin embryo.
1988,
Pubmed
,
Echinobase
Huh,
Global analysis of protein localization in budding yeast.
2003,
Pubmed
Janes,
A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis.
2005,
Pubmed
Kominami,
Unequal divisions at the third cleavage increase the number of primary mesenchyme cells in sea urchin embryos.
1998,
Pubmed
,
Echinobase
Kurokawa,
HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo.
1999,
Pubmed
,
Echinobase
Levis,
Effects of genomic position on the expression of transduced copies of the white gene of Drosophila.
1985,
Pubmed
Meng,
Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.
2008,
Pubmed
Meyer,
Gene targeting by homologous recombination in mouse zygotes mediated by zinc-finger nucleases.
2010,
Pubmed
Morton,
Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells.
2006,
Pubmed
Ochiai,
Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus.
2008,
Pubmed
,
Echinobase
Ochiai,
Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases.
2011,
Pubmed
,
Echinobase
Pattanayak,
Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection.
2011,
Pubmed
Raser,
Control of stochasticity in eukaryotic gene expression.
2004,
Pubmed
Sharma,
Regulative deployment of the skeletogenic gene regulatory network during sea urchin development.
2011,
Pubmed
,
Echinobase
Shukla,
Precise genome modification in the crop species Zea mays using zinc-finger nucleases.
2009,
Pubmed
Sigal,
Variability and memory of protein levels in human cells.
2007,
Pubmed
Sprinzak,
Cis-interactions between Notch and Delta generate mutually exclusive signalling states.
2010,
Pubmed
Szymczak,
Correction of multi-gene deficiency in vivo using a single 'self-cleaving' 2A peptide-based retroviral vector.
2004,
Pubmed
Urnov,
Highly efficient endogenous human gene correction using designed zinc-finger nucleases.
2005,
Pubmed
Wu,
Structural and functional interaction between the human DNA repair proteins DNA ligase IV and XRCC4.
2009,
Pubmed
Yajima,
Implication of HpEts in gene regulatory networks responsible for specification of sea urchin skeletogenic primary mesenchyme cells.
2010,
Pubmed
,
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