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The gene regulatory network (GRN) established experimentally for the pre-gastrular sea urchin embryo provides causal explanations of the biological functions required for spatial specification of embryonic regulatory states. Here we focus on the structure of the GRN which controls the progressive increase in complexity of territorial regulatory states during embryogenesis; and on the types of modular subcircuits of which the GRN is composed. Each of these subcircuit topologies executes a particular operation of spatial information processing. The GRN architecture reflects the particular mode of embryogenesis represented by sea urchin development. Network structure not only specifies the linkages constituting the genomic regulatory code for development, but also indicates the various regulatory requirements of regional developmental processes.
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19932099 ???displayArticle.pmcLink???PMC2810318 ???displayArticle.link???FEBS Lett ???displayArticle.grants???[+]
Amore,
cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo.
2006, Pubmed,
Echinobase
Amore,
cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo.
2006,
Pubmed
,
Echinobase Barolo,
Default repression and Notch signaling: Hairless acts as an adaptor to recruit the corepressors Groucho and dCtBP to Suppressor of Hairless.
2002,
Pubmed Bolouri,
Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics.
2003,
Pubmed
,
Echinobase Bolouri,
The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example.
2010,
Pubmed
,
Echinobase Davidson,
How embryos work: a comparative view of diverse modes of cell fate specification.
1990,
Pubmed
,
Echinobase Davidson,
Network design principles from the sea urchin embryo.
2009,
Pubmed
,
Echinobase Davidson,
Properties of developmental gene regulatory networks.
2008,
Pubmed
,
Echinobase Evans,
Translational control of maternal glp-1 mRNA establishes an asymmetry in the C. elegans embryo.
1994,
Pubmed Geiss,
Direct multiplexed measurement of gene expression with color-coded probe pairs.
2008,
Pubmed Gurdon,
A community effect in animal development.
1989,
Pubmed Howard-Ashby,
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.
2006,
Pubmed
,
Echinobase Howard-Ashby,
Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development.
2006,
Pubmed
,
Echinobase Kumano,
Ascidian embryonic development: an emerging model system for the study of cell fate specification in chordates.
2007,
Pubmed Kurokawa,
HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo.
1999,
Pubmed
,
Echinobase Logan,
Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo.
1999,
Pubmed
,
Echinobase Mahmud,
The surprising complexity of the transcriptional regulation of the spdri gene reveals the existence of new linkages inside sea urchin's PMC and Oral Ectoderm Gene Regulatory Networks.
2008,
Pubmed
,
Echinobase Materna,
The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development.
2006,
Pubmed
,
Echinobase Minokawa,
cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network.
2005,
Pubmed
,
Echinobase Nam,
Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network.
2007,
Pubmed
,
Echinobase Oliveri,
Activation of pmar1 controls specification of micromeres in the sea urchin embryo.
2003,
Pubmed
,
Echinobase Oliveri,
Global regulatory logic for specification of an embryonic cell lineage.
2008,
Pubmed
,
Echinobase Oliveri,
Development. Built to run, not fail.
2007,
Pubmed Oliveri,
A regulatory gene network that directs micromere specification in the sea urchin embryo.
2002,
Pubmed
,
Echinobase Otim,
SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis.
2004,
Pubmed
,
Echinobase Owraghi,
Roles of the Wnt effector POP-1/TCF in the C. elegans endomesoderm specification gene network.
2010,
Pubmed Pehrson,
The fate of the small micromeres in sea urchin development.
1986,
Pubmed
,
Echinobase Peter,
The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage.
2010,
Pubmed
,
Echinobase Range,
LvGroucho and nuclear beta-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo.
2005,
Pubmed
,
Echinobase Range,
Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF-beta related to Vg1.
2007,
Pubmed
,
Echinobase Ransick,
Postembryonic segregation of the germ line in sea urchins in relation to indirect development.
1996,
Pubmed
,
Echinobase Ransick,
New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.
2002,
Pubmed
,
Echinobase Ransick,
A complete second gut induced by transplanted micromeres in the sea urchin embryo.
1993,
Pubmed
,
Echinobase Ransick,
Micromeres are required for normal vegetal plate specification in sea urchin embryos.
1995,
Pubmed
,
Echinobase Ransick,
Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo.
1998,
Pubmed
,
Echinobase Ransick,
cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification.
2006,
Pubmed
,
Echinobase Revilla-i-Domingo,
R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres.
2004,
Pubmed
,
Echinobase Rizzo,
Identification and developmental expression of the ets gene family in the sea urchin (Strongylocentrotus purpuratus).
2006,
Pubmed
,
Echinobase Sethi,
Gene regulatory network interactions in sea urchin endomesoderm induction.
2009,
Pubmed
,
Echinobase Sherwood,
LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo.
1999,
Pubmed
,
Echinobase Smith,
A gene regulatory network subcircuit drives a dynamic pattern of gene expression.
2007,
Pubmed
,
Echinobase Smith,
Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring.
2009,
Pubmed
,
Echinobase Smith,
Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo.
2008,
Pubmed
,
Echinobase Smith,
A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo.
2008,
Pubmed
,
Echinobase Su,
A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo.
2009,
Pubmed
,
Echinobase Sweet,
LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties.
2002,
Pubmed
,
Echinobase Tu,
Sea urchin Forkhead gene family: phylogeny and embryonic expression.
2006,
Pubmed
,
Echinobase Wang,
Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.
2006,
Pubmed Wikramanayake,
Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages.
2004,
Pubmed
,
Echinobase