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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041602263.1 PREDICTED: Lytechinus variegatus protein-serine O-palmitoleoyltransferase porcupine-like (LOC121410281), transcript variant X1, mRNA CCCTTGATCGAGTGACGGATTGCATGCCCAGGCTAGCAGAGCCTAGCGATAATATAGCTAGCGGCATCGC ATCCGATCCGGGGCGCGGCGCGCGCCGGCGCGGCGGGGAATGAAGAGATCTTGGATCAGTGCATGCAGCG CAGAGATTTCTCTCACCACATGTATCCGTTGTAGCATTATCAGTCAAAATCAGGGACTTGTCAACGGAAA TTTGGATAAGCAAGGATAGAACAGAATGGAAGGTGATTGGCAGGACTATGAAGACTATGGTGACATGATG ATGGAAGATTATCTTCCATCCTTAGAAGATCTGGAAGCAATGGGAATTGACCCTGAACAACTTCGTGATC TTCCTGATGATGCACTTTATCAACTCATTCAACAATACATGATGAATAACAACCAAATGTATGATTATGC TCCGGGATCTGATATGGGAGCAGAATCAGATTTCTCACATGTTCAGCATATCAAAGATTGTACAATGTCT GTTGCATTGCAAGGGATTCACCTTATGCTCCCTCTCTTCTTACTTTGTGTGAGCTTGAGAGTGTCTGCTC TACTAGAAATTCCCATAAAATTTCTTCACATGGTGTGTGCATGTTCTGGTCTGTATCTGATGTGGATAAC ATTCCAGGTGGATGCAGCATACATTATCTGTCTTGCTCTACTCGGTTATATCCTGCTGTATGTCCTTATT CACATTGATGTCAAACAGAAAGGACCTATCTTAGCCATTTTATGCATCATTACCGTCATTTTATTGGAGT TGTTCGTAGCGGATCCTGTCAGTTGGCACAAAGTTAGAGGTGCACAGATGATTTTGTTAATGAAAGTGAT TTCAGTAGGCTTTGATCTAGATCAAGGGATATTGTCCAGTCTGCCTGATATCTTTGAATACTTTGGCTAT ACCTTCTGTGTTGGAACATGTATCTTTGGTCCATGGGTGAGCTTTTCCAACTACATGGCAATGCTACAAC CACACCAGCTGAATCTACAGTGGTTTGTCCATGCTATTACCAATGCATTATTAGCTGTTCTGTGTCTTCT GCTTTCAGTGTGTGTAACACCTGTTCTATTTGTCGGCTACAAAGCAAGGTGGTTGCTGGCATACAGTGAT GCTGCTTCATTTCGATATAGTCATTACTTTGTGAGTTATCTATCTACTGCATCTAGTGTACTAGCTGGAT ATGGTGCAGTAAAAGATATTGATGGAAATACCAGCTGGGAGTTCTCTGTGGCTAAGCCCATTCATATAGA GATTCCAAGATCACTTGTTGAGGTTGTAACTAACTGGAACCTACCCATGCATTATTGGCTGAAAAATTAC GTTTTCAAAACGAGTCAAAACTTTGGCAACTTTATTGCAGTACTTGTGACATATGCTGTCAGCTCAATCC TTCATGGTCTTAACTTTCAATTAGCTGCTGTTCTTCTTTCTCTGGGATTCTATTCATATTCAGAACATGT ATTCAGACATAAATTAGCTGATATATTCAGTGCCTGTATAAGGGCAAGGAGATGTAGAGAAGAGTGCCCA CATCATTATAAGAATACACATCCATGTGTGATTACAGTCAATCTTATGTTTGGCCTCTTGGCTGTATTTC ATCTAGCATATCTTGGAGTTATGTTCAATACAGATGCAGAAATACAGGAAGAGGGTTACACAATGGAACA CACACTTGAGAAGTGGTCCAACCTTGGCTATGCTAGTCATTATGTAGTACTTGGAACGTTTCTCTTCTAC TGGCTAATCAAGTGATCTTTCAACTTTTTTTATATAATCATGAGTAAAACTACGCACAAGTCATTGTTCA ATATACAATTTTCACATATGTATATATTTTGGAAAAGAATGTAATTGTTTTCCTCTTCCTGTTTAATTGC CAACTAATGCAATAAATGTGTTGTTTTTTTCAACTGAACAGTGATCAAAAGATTTAATAATCCATTGCAT CAAACTGCCTCAGGACCTCTATCATACTGATAGACATGTCTAGTAAGGACATGTACAGTAGAATTTTCAG TTTCTCCTTCAGTCATATATAAGAACAAGGCAACACAGAACTATCAGAAATATTTAACAGTGATTTAGGA ATTATGTAATGATTCTGTAAGATCACCATCGGTTGACCACCTTTACAAGAAATGGAATGTTTAATACCAT GGAGCTACTCTGAGAAATAAGGGATTAACTTGAGGTATTATTTGGCTATTGAAGCTCCAAGACCCTCCCA TTTTGTTTCTTCCAAGAAAAGAGGACTAAAAACAATTGAAATTTGCAGAAAGAGACGTCAAATTAAATTA CTCCAAAAGTTTGAACATCTTTATTGGTATGAATAATGATTAATAAAAGAGCTTAACTAGTTCTTAAAGA AGATTAAAGTGAGGGAAATATTTCAATACTTCTTGTTAGTGCATCCACATTCTTATGGTTGGTAGCTTTA AGAAAGAATACTGAAAACTGTAATAGGACCATTCTGACCGCATACAACCATTATATTTGTGTATTTTTTA GGTGAAGGTGATATACAAGTATGCTTATCATGATTTGTGATTTGACATCAAGCAGAGGAAGAGTTAAATA CAAATCCCTTTTCAATGTTTTTAAAGCCTAGGTGACCATCTTACAGAAAACTTCAACTTTATTTTTGAGT TTTTGAGTAGGTCTTATATGAACCATATCATCTGTCATTCACAGCCTTTGGGATTTCATAGTCCAAATCA TAAAATGGAGTTGAGTATGTATTTTGTGAAAATGAAGGGATATTTGTAACATATGTTAATACTTGTACCT GAATAACTGAACTTCTGAATACTCACTTTATGGGGTTGTGTATCCTGACAATAAGTTCAAACATTGTAGA AAAATATAGGTGAAGGTGTGATAAGTATCCATCAAAGAATATTGAAGGGAGAGATGAATTTCAAAAGTTT TGAATATATGATGCCATATATGAGAGCAGCTCCCACATATATCATGTACCGGTAATATGAATTTTAATAA ATT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
