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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041602263.1 PREDICTED: Lytechinus variegatus protein-serine O-palmitoleoyltransferase porcupine-like (LOC121410281), transcript variant X1, mRNA CCCTTGATCGAGTGACGGATTGCATGCCCAGGCTAGCAGAGCCTAGCGATAATATAGCTAGCGGCATCGC ATCCGATCCGGGGCGCGGCGCGCGCCGGCGCGGCGGGGAATGAAGAGATCTTGGATCAGTGCATGCAGCG CAGAGATTTCTCTCACCACATGTATCCGTTGTAGCATTATCAGTCAAAATCAGGGACTTGTCAACGGAAA TTTGGATAAGCAAGGATAGAACAGAATGGAAGGTGATTGGCAGGACTATGAAGACTATGGTGACATGATG ATGGAAGATTATCTTCCATCCTTAGAAGATCTGGAAGCAATGGGAATTGACCCTGAACAACTTCGTGATC TTCCTGATGATGCACTTTATCAACTCATTCAACAATACATGATGAATAACAACCAAATGTATGATTATGC TCCGGGATCTGATATGGGAGCAGAATCAGATTTCTCACATGTTCAGCATATCAAAGATTGTACAATGTCT GTTGCATTGCAAGGGATTCACCTTATGCTCCCTCTCTTCTTACTTTGTGTGAGCTTGAGAGTGTCTGCTC TACTAGAAATTCCCATAAAATTTCTTCACATGGTGTGTGCATGTTCTGGTCTGTATCTGATGTGGATAAC ATTCCAGGTGGATGCAGCATACATTATCTGTCTTGCTCTACTCGGTTATATCCTGCTGTATGTCCTTATT CACATTGATGTCAAACAGAAAGGACCTATCTTAGCCATTTTATGCATCATTACCGTCATTTTATTGGAGT TGTTCGTAGCGGATCCTGTCAGTTGGCACAAAGTTAGAGGTGCACAGATGATTTTGTTAATGAAAGTGAT TTCAGTAGGCTTTGATCTAGATCAAGGGATATTGTCCAGTCTGCCTGATATCTTTGAATACTTTGGCTAT ACCTTCTGTGTTGGAACATGTATCTTTGGTCCATGGGTGAGCTTTTCCAACTACATGGCAATGCTACAAC CACACCAGCTGAATCTACAGTGGTTTGTCCATGCTATTACCAATGCATTATTAGCTGTTCTGTGTCTTCT GCTTTCAGTGTGTGTAACACCTGTTCTATTTGTCGGCTACAAAGCAAGGTGGTTGCTGGCATACAGTGAT GCTGCTTCATTTCGATATAGTCATTACTTTGTGAGTTATCTATCTACTGCATCTAGTGTACTAGCTGGAT ATGGTGCAGTAAAAGATATTGATGGAAATACCAGCTGGGAGTTCTCTGTGGCTAAGCCCATTCATATAGA GATTCCAAGATCACTTGTTGAGGTTGTAACTAACTGGAACCTACCCATGCATTATTGGCTGAAAAATTAC GTTTTCAAAACGAGTCAAAACTTTGGCAACTTTATTGCAGTACTTGTGACATATGCTGTCAGCTCAATCC TTCATGGTCTTAACTTTCAATTAGCTGCTGTTCTTCTTTCTCTGGGATTCTATTCATATTCAGAACATGT ATTCAGACATAAATTAGCTGATATATTCAGTGCCTGTATAAGGGCAAGGAGATGTAGAGAAGAGTGCCCA CATCATTATAAGAATACACATCCATGTGTGATTACAGTCAATCTTATGTTTGGCCTCTTGGCTGTATTTC ATCTAGCATATCTTGGAGTTATGTTCAATACAGATGCAGAAATACAGGAAGAGGGTTACACAATGGAACA CACACTTGAGAAGTGGTCCAACCTTGGCTATGCTAGTCATTATGTAGTACTTGGAACGTTTCTCTTCTAC TGGCTAATCAAGTGATCTTTCAACTTTTTTTATATAATCATGAGTAAAACTACGCACAAGTCATTGTTCA ATATACAATTTTCACATATGTATATATTTTGGAAAAGAATGTAATTGTTTTCCTCTTCCTGTTTAATTGC CAACTAATGCAATAAATGTGTTGTTTTTTTCAACTGAACAGTGATCAAAAGATTTAATAATCCATTGCAT CAAACTGCCTCAGGACCTCTATCATACTGATAGACATGTCTAGTAAGGACATGTACAGTAGAATTTTCAG TTTCTCCTTCAGTCATATATAAGAACAAGGCAACACAGAACTATCAGAAATATTTAACAGTGATTTAGGA ATTATGTAATGATTCTGTAAGATCACCATCGGTTGACCACCTTTACAAGAAATGGAATGTTTAATACCAT GGAGCTACTCTGAGAAATAAGGGATTAACTTGAGGTATTATTTGGCTATTGAAGCTCCAAGACCCTCCCA TTTTGTTTCTTCCAAGAAAAGAGGACTAAAAACAATTGAAATTTGCAGAAAGAGACGTCAAATTAAATTA CTCCAAAAGTTTGAACATCTTTATTGGTATGAATAATGATTAATAAAAGAGCTTAACTAGTTCTTAAAGA AGATTAAAGTGAGGGAAATATTTCAATACTTCTTGTTAGTGCATCCACATTCTTATGGTTGGTAGCTTTA AGAAAGAATACTGAAAACTGTAATAGGACCATTCTGACCGCATACAACCATTATATTTGTGTATTTTTTA GGTGAAGGTGATATACAAGTATGCTTATCATGATTTGTGATTTGACATCAAGCAGAGGAAGAGTTAAATA CAAATCCCTTTTCAATGTTTTTAAAGCCTAGGTGACCATCTTACAGAAAACTTCAACTTTATTTTTGAGT TTTTGAGTAGGTCTTATATGAACCATATCATCTGTCATTCACAGCCTTTGGGATTTCATAGTCCAAATCA TAAAATGGAGTTGAGTATGTATTTTGTGAAAATGAAGGGATATTTGTAACATATGTTAATACTTGTACCT GAATAACTGAACTTCTGAATACTCACTTTATGGGGTTGTGTATCCTGACAATAAGTTCAAACATTGTAGA AAAATATAGGTGAAGGTGTGATAAGTATCCATCAAAGAATATTGAAGGGAGAGATGAATTTCAAAAGTTT TGAATATATGATGCCATATATGAGAGCAGCTCCCACATATATCATGTACCGGTAATATGAATTTTAATAA ATT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
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Off
BLAST time is limited to 30 seconds