Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041617271.1 PREDICTED: Lytechinus variegatus intraflagellar transport protein 140 homolog (LOC121422314), transcript variant X3, mRNA TCGGCCTTAATTTGTTTCGCTAACTTTAGAAGAAATAGCTTCACCCACCAACCGTTGTCAACCGATTACC GTAATCATATTGCTCATTTACCTCTTAGGTCCGAGGACGGACCTATAATTTTATATGGAAACCACATCAT TTTGAAAGAAGAAGGTTGTTGTATCCAAGATGGCTATTTTCTTTGATCATCGAGTTCAGTCAGGCTCAAC TAGCCATGTTGATATATCATGGCATAATGAACAACCTTTACTTGCTATTGCAATGAGAGGCCAGCAAGGC GGAGGTGTCATCAACATTTTCAATGAAGAGGGTCAAGCCCTTCCAGCAGCTAATCTTCAACGTTCTTGCT ACTCCACCTCATTGGCCTGGCATCCTACCCATCCTTCAGTGGCTGTAGGATGGGAGAGTGGAGAGATATT AATCTGGAATGAGCAAGATCAGCAGCTTCAGGAAGCCACCAAACTTCACAAGGCTCAGGTCTGCTTGCTT CAATGGAGCGCCAAGGGTCAACGTTTATTATCAGGGGATAAGGAAGGAACATTGATCATGTGGAAGAGTG ATGGAAAAGGTCATCTGACTAGTAATCCTATTAGTCAATTACCATCTCAACAGACACCAACCCAATGTTT ATTTCCCTATGGTGGACCAAAACAGGATGATGAACGGAGTGCCCCATGGAGTTCAAATTTGTACAAGGGT TCATCCAGTCTAATAGCGGATGGCAATGCTTGCTTTGTAGGAGGAGAGGAAGGTCACATTGTTTTCATGG ATGACAAGGGCAACATGTCCCAGGCTGTATCTGTAGAAGGCCCAGTCAAGAAATTGCTGTATAATAGCCA TCGGAATGTCATGGTGGTTGTAACTAAGTCAATGGCTCTATCTCAATACAGTGTTTCACAAGATGGAAAG CTGACAGAAATGATGAAGGTGAAGTTAAGTGGTAAACCTAATGATAGTGACTGTGACATGGTTTGGGCTG GTAAGGGTCTTCTAGCAACAGCATCTGGAGAATCATTAGTCAGGATGTGGGATCTTGATAAGGATGATAA CTATGTTCTTGCTCTGGATAAGAATATCGGCTTTGAGATGGGGGAAAATATCACATGTGTTGCGTACTCT TCAAAAAAGGGTTTATTGGCTGGAGGTACAGACAAGGGTCGGGTAGCTATGTGGCGCTACTCACCTGTTC CTGGTGTCTTAGGGCGTAGACAGGAAGGAGAAACCAAATGGAAACTTCAGGTCCCTTGTAACCTAGAAGG TCAACTTGGTCAGATCAAATGGGGTTCAAGGAGGGATCTACTAGCTACTAATAGCTTCAGTGGAGTAGTT ATTCTCAATGAACACATCATGAGTGCTAGTATGAAAGATCAGGTTGCTGTAGTCCAAGCTGGACCTAGTT CTATTTCTCTAGATGTCTTTGTGAATGGCTCTCATCATGACATTAAGACTGATATACATATCAAAGGAAT ATGCAACACTAAGGACCATGTTGCTGTATGGAATGGCAAGCAAGCTGTAGTCTATGAGATTAGTCAAACC ATCAGGGCAACAGGTACTTTCTCAACTGACTCTAAGATGGTTCGTATTCATGAGCAGAATGCATACACTA CAGAACCAGGAAAAATACAAGTCAGAACTTTCCAGGGCACTGTAAAGCAACTCATCTCAATGAATGAGAA TGAAGGGGAGCCCTGTACAATGGAAATCATGGGTAATTACCTAGTTGTTGGAACATCAGGAGGGTTTGTG AAGATGTATGATGTATCAAGGAGGGAAGCTAAGCCGCACAATACTCCTAAGAACCTAATGGATGTTATAC CTGGTATGGGAAGCATTCTTATGGCTAAGACTAACTGTAACGGTACAAAGCTTGCTATCATCGTCTCAAA GAGTGATGGTACTACTGACCCCAAACTGTATGTATGGGATCCTGATCTAGACACGTTAGGTTTCTTTGAT CTAAAGACAGGACATGGTGATCAAGAAGATGAACCTCTTAGTAAAGATGATGATATCACTGATGCAGAAA GGGGTCGTGAGGAAGCAGCCCAGGATGTAGCTGGTCGTTATCCAATCAATATCTTCTGGGATACACATGA ACCTAAGCTGTTGGTTTGTGAAGCAAAGCTATCCCATCAGGAAGAGACTACTACACCTAAGAAAACTACA TCTCTACTGAGTACCATCGTCAATACACAGCCTGAGATGATGGTAGTATCTCTGTTTACAACCTTGGAGC ATGGTGTGGTCCTACAGGATAGTTTTGGTCATGTCCAGGGGACTTTACTTGGTGTAGAAGTACCATACTT CTACTTCATCAAGAAGGCTGGGGATGGGAAAACAAAGAAAGGAGTTTTCCCTGGTGAGAAGATGGATGAT CCTGGTCCTATTTCATCATCATCTCTGGTTGCTAGACAAGTGATGAGAAACTTTGCTGGTTTAGAAGACG GTGATAAGAGTGCTAGAGATGCTATGATGAACTTTAGTTATTACCTCACTATTGGTAATATGGATGAAGC ATTCAAAGCCATTAAACTTATCAAGAGTGAGTCAGTATGGGAGAACATGGCTAAGATGTGTGTGAAGACT AGAAGGTTGGATGTAGCCCGTGTTTGTCTTGGTAACATGGGACATGCTAGAGGAGCTAGAGCTTTAAGAG AAGCTGAGAATGAACCAGAGCTTGATGCAAGGGTTGCTATGCTTGCTGTTCAACTTGGGCTGTTGGATGA TGCTGAGAGACTGTACAAGAACTGTGGACGTTATGATCTTCTTAATGCATTCTACCAAGCCAGTGGACAG TGGGGAAAGGCCATGGAGACTGCCGAACTGAATGATCGTATTCATCTAAGAACTACCTACTATCACTACG CTAAACATCTAGAGGCAAAGGGTGACATCAATGGAGCTATTCCAAACTATGAGAAATCAGATACACATCG ATTTGAGGTTCCAAGAATGCTGTTTGATGAGCCTCAGGCTTTAGAAGCGTATATTATGAAGACAAAAGAC AGAGCATTGAGGAAATGGTGGGCCCAGTACATGGAGAGTACAGGAGAGATGGAGACAGCTTTACAGTTCT ATGAAGCAGCTCAAGATTACCTATCCCTAGTCAGGGTTTACTGTTACTGTGGTAATATTGATAAGGCTGC TGAGATTGCTAATGAAACGGGTGATCGAGCAGCTTGTTATCATCTTGCTAGACAGCATGAAAATCAAGAT AACATCAAAGAGGCCATTCATTTCTTCACTAGAGCTCAATCATACAGTCAGGCTATTAGATTATGCAAGG AACATGACATGGAAGATCAACTAATGAACCTAGCTTTGATGAGTACTAAGGAAGATATGATAGAAGCAGC TCGTTACTATGAAAATAACCGCAATACTCATGATAAAGCTGTTATGCTTTTCCACAAGGGAGGTCATTTC TCTAAGGCCCTTGAGCTAGCCTTTGAAAGCCAGCAGTTTGGTGCCTTACAGCTCATCTCAGAAGATCTTG ATGAAAGAACTGATCCAGTTCTTCTCAATCGATGTGCACAGTTCTTCATGGAACATGGACAGTATGACAA GGCTGTTGATTTACTTGTTGTAGCTGGAAAGTATTTTGAGGCATTAGAGCTCTGTCAGGATCACAATGTG AATATCACAGAACGCTTAGCTGAGAAGATGACATTGTCTAAAGATGATAGCCAGGGTGATATGAGACTCA AACTATTAGAGAAGGTGGCTGATCTATGTTTCCTACAAGGATCATATCACCTAGCAACCAAGAAATATAC TCAGGCTGGTAACAAGGTCAAGGCTATGCGAGCACTCCTGAAATCGGGTGACACTGAAAAAATCATCTTC TTTGCTGGTGTGTCACGTCAGAAAGAGATCTATGTCATGGCTGCTAACTATCTCCAGTCCTTGGACTGGA GGAAAGATCCTGAGATCATGAAGAATATTATTGGTTTCTATACCAAAGGAAGAGCCTTAGACTCACTGGC TGGCTTCTATGATGCTTGTGCACAGGTTGAGATTGATGAGTATCAGAACTATGACAAAGCTCTTGGAGCT TTGACAGAGGCATATAAATGTCTTAGTAAGGCTAAAGTCAAGAATCAGACACAGATTGAAGAGAAACTAG GAGCTCTTAAACATCGGATCAGTCTTGTCAAGAAGTTTGTCCAAGCAAGAAGAGCGTATGATGAGGAGCC AGAAGAATCAATGCGTCAGTGTCAGGTCTTGCTTGAAGAAACAGAATTAGACAGCGCTATTAGGATTGGT GATGTGTATGGCATGATGGTAGAACATTATGCTAGACAAGAGAATTATAAGAAGGCCTATGCTTTTATGG AGGAGATGCGATCAAGGATAGCTACTGTCAACATGGCCTACTACATCAACATCCGCACCATTGAGGCTGT ACACAGAGCCCTTGACATACCTCTTGGGCGTGGCACAGGGGCGGAGAAGAAGGGTGTGGTCATGGGTGAT GATCTTGGTCAGGATGAGGATGACGGAGAGGAGGTAGAAGAAGATGTTCAGGAGGATTATAATGAGGATG AGGCTTACTGCTGATCATGCGTGTAACCCATTGACTAATGAATTCTGTATTCCCCATAGACTAAATACAG GGACAGCCTGATTCTTGTAGGTATTGGGTTAATCCATTGACTACTGAATTCTGTATTCCCCATAGATTTT ATACAGGGACAGCCTGATTATTGAATTTAATTAATATCTCATTGTCAAGTACATTCATATGAAATATTTC ATCACACTCTGAAAATAATCAATCAGTAATTATTTTTTGCTACAATTAAAGTAACATGTGTTGCATATTG ACAATGCCACATGGGTAATGATATCCATTGACATCATTTTTGGAGATGTAGTCATTATTGTCATTTAAAA TTTGAGACATCTTTTATTCTTAATTGGTTTCTTTTGAAATGTTATCACTGTTGAGTTGCCAACATGTATA TAGTGTGAAGAAAACTGTGATGTGCCTTGTACACACTAGATAAATGAGCCATATCAAATACTCAATTGAT GACTGGATAGAAAAATTTTATCATCCAAACTCTTTCATTACAATGATTTCCATCTGAGATCCATAACATA CTAATATTTCACCCACAGTAATAATAATAATAGGCATTTATATAGCGCCATCTATCTAAAAAGAATCCAT TCCAAGGCGCATTGTTTATTATTATTATTACCCAGGCTAATGTGATAACAGGGATATTGTGCCATTTTCA CAGAATAATGATTAACATTCATTCTTGCGGAATAAACCAGTATCTTGCTCTTGCATTCAAACCTTAGCAA AAGTTAATTGTTCAGAATAAAAAAATCAAAAACACATGGTTGACATAACACTGTATCCACTGGGAGTTAC TTTCCTGTGATGATATATAGGCTCAGTGATTTCATTGATCATGGTTGCCAAAATACTAAATTGATTTATG GCTACTATATCTATACTGTAAACATGTAGAAATTGTGGACAGTGTTTTTCATGATGAAATCTTCTTGCAT ACCTTGAGTTTTAGTACTATCTGTAAAAATGACTTCAGATTTGTAGCAGCTTTATTATTGACCTTAATTC ATATGATCATAACATATCATTGAAAAGTATTTGCATCTAATAATCGGTATTGTCATTTTAGTGGTCAGCG ACAAATTGATTCAAAATCTCCAACCAGTGCTCATTGCTAAACCACACAAATCTCTCCAAGGCTATTTCCC CACTCATTGTCAGTTATCCAGGTTTTAAACCCAGTTTAGGTCATGACTAGGAGGGTTGCTGGAATCATCT CACACTCACAGAGATCACCCTGACCCCCCCCCTCCACTCTATTTGTTGTATCACCCCACCCCCCCCTCCT TAATCCAACCCTATCCTCTACCACTTTGCTGCTTCCATGTCTTTTTCAGTTGCCCTCTTTCTCCCTGACC AGCCACTTTGAAACCGGTGGTAAAATGATGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
