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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041609746.1 PREDICTED: Lytechinus variegatus protein dead ringer homolog (LOC121416239), mRNA TATCAAAGACGGGAAGTGAGAACAGATCGCACCGGTGCGAGTTAGATTTATTGTTCAAGAGCATTTACTA TTGCACACCTTATCAAATTAGCGTGAGACCACTGGACAAAGTCATCGAAACAGTTGGATAGAATCTCTCA AACAATACTCACTTCGTTGGTCTCCGATTGTCCAATCATGTCATTCGCTCTTGGGGTGTAAAGTTTTGTG ATGAAAGTCACCTGGCCAAGTGAATAGAACAAATTAGAACTCGGTGGATAACTTGACTTTGTAACACTGA CTTTAGCGATCCTTCGGTTTTCGGGTGAACCACCGCGCGGTCAGTTCAGGGGTTGAGGCAAACGAATGTC TGTAGACTTTACATGTATCACACCAAATCACATTTCTTTTCACCAACACGAGGAAATGGAATCGCTTCTT GCGGCAACCACCAAACATATGTCTCCCAGGCATCTTGCGATGTTTGAGATGTCACGAAGAGAGATGCTTG AGAAATATATTCATCAAAATGGACAAGACGAGAATGAATACCAGGAGAAAGTAAGAAGGATGAGTGTAGA TACCACCAGTGATCAGGAAGAAGAAAGAGGGAAGGATGAGAGGACTGGAACTGCAGAGGACGAAGAGATA GAGAGAAGGAGAGTGATGGAAGAACAGAGGAGAATCATTGAGGAACAGAGGAGGATAGTGGAAGAACAAC GAAGGAGGATGGTTGAAGAACAGCGAAGACAGCTGATGGAAGAAGAAGATGAGGAAAGAAGGTTGATCGT TGAAGAACAGAGGAGACGGATGATGAGGGAAGAGCAAGATGAAGAGGTTGGTGAGGAGGAGGAGGAGGTA AGGGAGGGCGAAGATGACGGACCATCAGAGGATGAGATGAGGGCTGATGATCCGATTGGTAGACGTGATA CCAGCCACGCCCATATCGATCTGAACATGATGCGAGCCAACACTCATCTCAAGGAGATGATTGATAAGAA CCGTCGATATGTTTCTACCCGCCTGGAGGACACCAACACCCATTCTCCACCCCTCACCAATGGTAGTATC CATAGCAACGAACACGATCCGTACCTGTCTCATCGGGCTGCTCATGGTGGAAGTCCTGATCTACCACACT CCTACATGAAAGCTTCTCACCCTCTTATAAAGAAAGAAGATGGTCTGAGTAAAATGGAGATGGATGTTGG ATTGAAAGACGAGATGAAGATGACGTCTAATCTTGAGGATAGAGATGGAGAGAAACCTCAGACAGAATGG TCTTTTGAAGAGCAGTTCAAACAGCTTTATGAACTCTCGAGTGATTCCAAGAGAAAAGAATTCTTAGATG ATCTCTTCAGTTTCATGCAGAAAAGAGGTACACCAGTGAACAGAATTCCCATCATGGCAAAACAAGTCTT GGATCTGTATGAACTTTACAATCTAGTGGTCGCAAAGGGAGGTTTGGTTGAAGTCATTAACAAGAAACAA TGGAGAGAAATCACCAAGGGTCTGAATCTACCCGCATCCATTACCAGTGCAGCGTTCACACTCAGAACAC AGTATATGAAGTATCTCTACCCATATGAGTGTGAGAAGAAGAGTTTGAGTTCACCATCTGAGCTCCAATC AGCCATCGATGGGAACAGACGGGAGGGGCGTCGACCATCCTACCACAGCCCTCACATGCACCCCCGTGGC CCCTCCCTAGCATACCATCATGGGTTAGATCTACACACCCCTTCTGGTTCCCCTCCACCCACGATGATAC CACACCCATCACGCATCCCTACTCTGCCTACGAGATTATCACCATCTACATCACCAATCGAGGATGATCA TCCAGTACCCCTAGGCCTCCCACGACAAGGCTCTCTCAGTCACGCTGCGATGCTCGCTGAGCTAGCAGAA AGGGGATCGATACCACCACCTTCTAAACGATCTTTGCTGGCAGAAGAACATCATCAGCGGCTATTACAGC TTCAGCAGCAACATCTTCTCATGCCTTCAGCTCATCTTAAAGTGAGCAGTGCAAGAGCACATCCAGATTC TGGCATGCCTCTGTTTGAGATGAGAGGAGACAATTCATTGGTGATGAGTATTGAGCTTAATGGTGTCTTA TACCAAGGAGTGCTTTACCCCAGGGGTGCACCGGGGCACCCCTTGCTTGGTGTACCAGTACCCCGCTCCA GTGCGTCTCCTAAGTAAAACGGAGCCCCTCAACAATATGGACTGCTGTCAAAAGGACTTTATGTTTGTCT GTATGGACAGACGTGTGTATTGAACTCTCATTTTCTGAGGAATCATCATTTAATCGAGAACCAAGATTGT CCTCCAAGATGAACTGCACAGGATTGAAAACCTGATTAGATAGCAGTCTTCTGAGCCAGATGGACTGATC TGATATGGATCGGATCTGAGTGGACAAAGCACCGAGCTAAAAGGTCGCTAGCAATGCATTGGTGCACTTA AAAGATTCTGAAACAGTTCATATTTCTTGATGTGTACATTCCATGATGTTATAGAATTGTATGGAACACT GTATAAATTCATGACATTTTCGACTTTTAGAAGTGAGAACAAAAAATTGTTGTCATACAGTGGGGGATAA CAATACCAGCTCAACATTACTGCCTGTAACTATGTTAAAGTTCTTCGCGGATTTTAGAAAATGCTATTTC ACTTTTAAAAATGACCTGGGTTAGTAGATAATCTAGTTCAGTAGACGATATTGGCTATTTTATGTATTTT GGGGATATGAAAACCTATATAGTTTTAGAATTTGGTTTTTGACATGTATATTGCATTTGACAATCTATTT CGTTATAAATCAGGGTTATGATTACATGTATTTGTGATTGAATTGTTTATTTGAATTGAACCGGTCGAAT AGAATATGCTATCTAATGTTATATTCTTAGCATGCTATGAGTGATGAGAGAAACTTGATTGCAGTTTTCA AATGATAAATTGCAATCGGTAGATCACTGTTGTAGATCAATTCATATTTCTGTTGAAAGGAGCAGACCAG CAATCACATGAAAACCTTTAATTGATCGAAAGACTTAAGATTTGACTTCAAATTGATTAGAATCACTAAA TAACCATCTCCTTTTTTCTGCAAAATAGTGATCATAAAAATAATAAAATTATTTTTTTTTACTTTCTAAT ATTTAAAGGAAATAGTTTTTTTTCATTTCATAATCCACACTATAATATTCTGCAAATAGCGTATCAATTT GGTTTGATTGACGTGTAGTTTGCTTGGTTTTGCTATGGTCCCTTCATCAGAAAACATTGGCTGCGTAACA CAAAGGTTTGCGATGGATTGCAAATATAAAAGAAGCGCACTGATTGGTCCCTGGTCAGTATTTTAAACCA AATGCGCGTGTAACGTTGATAATGATTGGTCAGTTCATTTAGCGATTGATCGCTAATCTTTGTGTTACGG AGCCCAGGACTTTGATTGTGAGACCTAACACACTTTACCTTTATGCTTTGGGACATGTATGTTGAGTTAT TTTGTGCAATAAATGTTCCATTTCATAAGCATTCATTTGGAGTTTACAATAAGCAGCCTGAGAAAAGACA ATCATGAATTATTAAAGCATATTGAAAAAATAAAACATTTTGTATTATATTATAGAAAGGAGAGTGATCT TCATGTGTCAAATTTTGTTCGTTCTTCTCATGACAAAATAATCAGAGAATACAAATGTCATTATACTTCT AACGTCTTACAATACGGTGTTATGTTGCAATCTTATCGTGTCTTAACGGGGATTACAGACTGGATAATGT TATTCTAATGTATATTTTTTTATAACTCTTTCTTCTTTACTGGAAAAAATGCGTAGTAGAATTATTGTAA TATTGATCATTCTTGGCAATAATTCTACATCGTTTGCTGCTTTATCATGTTTACAGTATTATCACAGAGA AAATGTGCAAAAATATGTTTAACAGCAAAGCATTCTGCTAATATGAGAACATATATCTTTACTATTTATT AAAACATGAATTTATATAAACTGGTTTTATAATTTAGCCATATAGGAAAGCCTGACATATATTATGAAAC GTGCTCACCTACAGGACAGGAGTTGATATATGGCGGTAAAGTAAATTGCAAAGTCGGGGTCAAAAGAAGA ACATATATTTATAGTAAAAAACAATGAGATCCCTTTGTTTTCATCTTCTCAAAATTTTGAACATTCATGG TTTTCATTTCATGTAGCATTTACCTCTGAGTGTATTCCTGTTAGAGATAGGCCTATTATAGATAAAACAA TTGGAAATTCAGATGTGAAATATGTACACATACAACTGAAATTTCGTGTTTGTATGTGTCATTATGATAG AAATTTCATGTTAATGCTTTGTTGAACTTTAACATGTCTAATGTCTGTTAAGTATGTGATCAAACTTATT ATTCTATTTCTTTAGGAAAACTTATAGACTGAATTAACCTACTATTTATATTATCACACAGCAATACATG GTTTAGTTTATTATTTTTTTATCTGCAATTTTTTTAGAACATTTCCACCTCTAAATTCAGGCCCTAAATA AAATATTTCTAATATCAATATCAGGACACTGCCTCTCTGTTATGTTCTAAAATGATAACATTAGTAATTT TAACGAACATTATACTTGCACCCTTTGCTATTCAATAATCCTTCCAATAAATATCTTATTCAATGAATAT GGTGCTCATCTTGATAATTTTCTGCATGTCATATTAGTGTTAGAATCGTGATAGCGTTCCATAAGATTTG TAAATATTAATGTTTGTATTTATATCTTATGTAATGTTAAATGTACAGTTATATGTATAAGTAACTACGA ATCTTGTAGAAATATAAACTTCATAACAATCAACCATGCTCTTGAAAATGATGTCAAAATAATTACATTA CTCTACTATTTCTACTATGGGTAGTATAGATTTTTAATCCATTTAACAGTGATTGCATAATCATCATTTT GAAGATATAGTTAAGCTCTGTGAATAAGTATTTGTGCGTATAATCTAATTTTAATGTTCATAGAAAATAA AGGACATAATACAAGAATATATAAGTAACTTCACATTTATTTGTTCTTTATACTTAAATACAACTACCAT GAAATATAACAACATGCAAGTTTCATTCTTGAGTTATCTATAAACATTAACACATGAAATATCTCAATGA AACTGATTGTAGAAAATTGTACAATAGGTTTAATTTATCATGATAAAATCTAAACGTTTCTTAAAGTATT CAACCATGTATTCATGAAACATTTTCTTTATCACGTGCCAATTCGTTCTCTGCAATGGGACGATCATAGG TTATGTTATTTTGTAGATACTAAAATAGATTTAAATCTGAAAAAACATTGCACAAATCGTTAACTATGTA CATGCTTATCGCAGTGTTTATTGTCTGAACTCTCTTTTTTGTGCCTTTTGTTTGTCTTTCATTGCTTTAA TGCAAACAGGTGCAATTTTTAATAAACGTTTGTGTGCTGGGTTCATAATTATATATTTGTTATTGAGTCG TTTACCTATTTAAATATAGAAGAGGAGAAGCAATCAACTTAGTTAAAAAGGCTTGTTAGAAGAATACTTT CAAAATTGATGATTTTTTGGGGGGTTAACTTAGTTTTAAGTTTGTGAGAATATTTACGGTATTATGTACA TGCAGTACCCTGTTTGTAAACATGTAAATAAATCACCATGGTGAAAGCTTAATATCACATCTTAAAAATG TTGTCTTATTTCAGTTTTCTCTTTAAAAAATATGTATTTCTGATA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
