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Citing Echinobase
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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>GAUR01049718.1 TSA: Lytechinus variegatus AMR9006.36240.0.7 transcribed RNA sequence TAGATTTCATCAATTCAAGCTTGCTGGAAAAGGTATTTATGATATCTCTATGTGATAGAAAATAAAATCT GTAATGTGATAAACAGAAAAATCACCCAGGTTGCCTATATACAAACTTATGAAATCACAACGCTTCTATT ACTACATAACATCAAGTTCTCTTGAGGCCCGTGAAAAGCACAAAAAAAACCTATTTTAAAAGCTTGATAA TTGGATCTATTGTAAAGCAAAATACTCAGCTGGTTACAAGTGGTAAATATGCATAAAAGCTTGCACTACT TGCCTTTCAATTGGTGTTTGATTTTTCAATTTTATATTTGGGTCTTTTAGTGCCTTCAACTGTAGAATAC ACCCATTGTATGCAGGGACTCTATGTAGCAATTAGACTTCACTCCTTATAGCATAATCCATGTAATGATC AGTAGGCTTTTTTAAATTGCACCGATATCGGACACAACACTCCAAGCGCTCTACAATTTTTACGCTATAA ATCCATGGGTTTTTCTTTGCTTTTTTTCTTTGGGGGGTTTATAGTTTTACCATACATACAGCTGCTCTTG ACCAACAACTTGGTGGCCACAGGGACATGAATTTATAATATACTCTACCCCCAATGGGGGGATAGTTGTC TGCTGCAAAGAACATTTTGAATATTTACCTGGTTAATTCGCCATTGGTTTAGACCTTTGGGGATAAGAAC ATATTTCATTGTACCAAACTTGCATGCAGCCTAACATTTTGTAACATAATAAATACTGTTGGCTACTTTT TTTCTCTCTGCATCATACATACACTTAAATGTATCAAGCCTATTGCTATTACGAGCAACATACAGTACAT GTATATCAGAGACTGCTTCCTGATACCTCCTCAACAAGACTTTTTTAAGTCTTCAATAAATATCATGGTT TGAAAGACATGAAACTTTGATACATCAAATGTCTTCAATCTATCATGCTTACAACACTCTTGATGATTCA AGAACTCTTCCATAATACTAGTAGTACACTGGTCGAGTTGGTAATGCAATGGTATTGTAAGCTGTTGCCC GAGATTAAAGGCAAAGTCCGCAGACTCGGCACCCTCAAGTGCTTTGGTAAAACATTCAACCTTGTTTAAT TAAAAAATCTCACTGTCTGAAGAATCAGAATAAGAGAATCCATCAAGTCATCCACAGGCCACAGCACTTT GTATCCATAACTGTCCTTCAAATCGGCTTTCCTTGTAAGAAAGTCTATTTGTCCACAAGAAAATCACCTG ACTGGTCAGGAAACATCACTTGTTGCCATTTTGCAGATGACAGCATCTTCTAGGGATCCTACGGATAGTT CTGGTTTACTGATGGAGTATTTCTTCTTGATCATGATTTCATCTGTATGCATGGAGAGTTGAGATAGAGG AACACAGACTCCTTCAATCTTTGCAGCAATTGACTTCAGGTTGGTTTGATCAGGATCATTTAAAACAACC ACTACCACTGATGTGTCAGTTGATCCCATGGCGAAAACCTTGAAGGATTCACTGATATTTGTGGATGGAG ACAGGCTATAGATGATTTCAGAATTAACTGTCCTGGTTTTTGCATGGCCAGTGGCATGTGCATGGAGTGC CTTATTCACTGCTACCATTATCTGAAATGGGCTGACCAGCATTTTAGGAGACAGCATAACTGCATCAAGT TCTTTATTGATCAACATTCCCTTCAGATCAGTTACATTCATCACATCTTCAAACAACGCAATTGTTCCTG ATGTCTCTGGAAACAGCTCCAATTGAAAGTTGAGTGAAGGAAGGGGTGCATCAGCAGCAGCCATTTTGCA GAGTCAGATGTAATTGAGACCTGACAAAACTGATCCGCACCGCCGGTGGGTTCACTGGTATAAATTCTAA GATTTTGACTACCAGGCAGCTGTTGGTACCTGTAGCTCGAACATTTAGCTCTCCTGCAGATGATCTGAAA GTCAGCTATTTGGATGATGGAGGGATTGTTGTATTTGGAATGAACAGACCTGCTAACAAAAATGCGATTA GCAGAAATCTTCTTAATCTATTTGAAGAAGCAGTTGCCAAAGTCAGGTTTGATAATAATGTGAGAGCACT TATCATTAGGAGTGAAGCTCCAGGAATATTTTGTGCAGGAGCCGATTTGAAGGAACGAATAACGATGCCT CAGGAAGAAGTTGGTCCGTTTGTATCAAGGTTACGAAAGGCTATCCTTTCCTTTTCGGATCTTCCAATGC CAACCATAGTGGCCCTGGATGGTGTTGCTGTGGGCGGTGGCCTAGAGATGGCCCTGTCATGTGACATGAG GGTAGCTGCGTCATCAGCCAAGATGGGTCTAGTTGAAACTAAACTTGCCATCATCCCAGGTGGAGGTGGA ACTCAGAGGCTTCCCAGGTTAGTTGGTCCATCAATTGCCAAGGAACTCATGTTCACTGCAAGGACTCTAG ATGGAAGGGAGGCAGCACGTATAGGACTGGTCAACCACTGTGTAGAGCAAGATGATAGTCAGGAAGCAGC TTTCAAACGAGCATTGGAGCTTGCCAGAGAGATCGCCACTCAGGGTCCAATTGCTTTGAGGATGGTCAAG AAAGCAGTGGACAAAGGTGTTGAGGTTGATATTGCATCTGGACTTGCATATGAAGAAGCGTATTATGCTC AGGTGATCCCGACCAAAGATCGTATGGAGGGCTTGATAGCGTTCAAGGAGAAAAGGAAACCTAATTTCAA AGGAGAATGATTTCATGTGAAGTTGTTCCATCATCATGGCGATTGTGAATCAGGGTTTTGTCTACTACAA GAAGAATGATCAATGTTTTCAATCAACATCACAATGCTTTACTGACCAGTTCCATTAGATATCAAATAAC TTCATAATAAGGAACATCCACCGAAACATAGATTTCTGTGTCAGCCAGTAATTGGCTATCAGTTATTTTC ATGGTTTCTTGTCTACAACACCAGTGTATTCACATGTTTCCTTATATTAATGATTTTGGTGGTATTTGAA AGCCCAATGAATAGGTGAAACTATTGGTAATGCTAACCTTACAAAATAGAGTAATACATATTGATATATA GGAGACACAATTCCTTAGAACGCTCAAACACTTTTGGAGGAATAAAGCTTTTAAGGGACTTCTGAGTGAA AGAATCATGGTATATTGCAAAAGATTAATTTGTATCATAATCAATGAGGCTTTTCTGGTTTGTGATGATT AGAAAAGATAAAGGTACAGATAATATCAGGTTAATATGATTTTGATTACCGGTATACATAATCTTATATG TCTCATCTTGCATGTAAGGGGCGATATGAACAAATGTGATAACAAGTATTACCAGTGTTCCTTAAAATAT GTTAAAAAGCAGGCATGTTCAATGTCATTTGATAAATAATCTTTTTTGTTTAAATATGGTTGATCATGTT TCTCCTTTTATTAATATTGTATTCTAAGTATTCATTCAAGTATGTTGTAATTTTGTTTCAGAATCAGCTG CCAAAGCCCTTTCTTGAATTTGATTATGTAATTGTGGTATGTGCTCAGTTTTGTTTTGAAGTGAACAAAT CTTAAAGCTCCAATTACATGATTTTTCCTGTACCGATTGCAGAAATTTGCATTTGAACACAGCTTTGAAA AAAAATCAAAGTCAATTTAAGTTTTAGCCAATCAGAGGAACAAAAAATAATTTTCATTTGATTTTATTGC CATTTTCAATGCTATTCTTTGTGCAACTGTCTCCAGGTATATGTGTGATAAGCATGAAATTAATTGAAGG ATATTTCTATTATTATGTAAATATTAAATGCAATTAAATCTGTACAGGAAGATATACTATTCAGTATTGT TCTCGTGAATTCATGTGGTATGAACATACCTTGAATCGACATTCAACTAATTTCTAGTTATTTCTAGAAG AACTTTGAAGAATAAACTATATGAATATATGTTTGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
