Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038209676.1 PREDICTED: Patiria miniata intraflagellar transport protein 140 homolog (LOC119735761), mRNA TGTTGCTATGCTAGACAGCAGTTCGGAGAGTGCACAGACGTCGTTCATTGTTTTCAAAAAGAAATGGTAA AATCTGCCTAATTTTTCGGGGTTGAGACTGCCTTTAGAAAGCATAGTGCACTTGCATAGACATGACAGTC TATTTTGACCATCGTGTGCAGCCTCCTGCTGCAGGGGCTAATGTGGACATTGCATGGCATCCCACCCATC CGTACTTGGCTGTGGCAACGAGGGGCGAAGTAGGGGGTGGCTACGTTCAGCTTTACAATGAAGAGGGTGA GCCCATAGAGAACTCCAATGTCCAGCGGTCCTTTTCCCCATCAGCCTTAGCCTGGAACCCAAGCAAGCAG TCGGTCGCGGTCGGTTGGGAGAATGGCGAGATCCATATATGGAGTGAGCAGCACCACGAGCTGTTTGAAG CACCCAAGCTACACAAAGGAGAGGTCTGCTTGATAGTCTGGAACGATGCAGGGAGCCGTGCACTGACGGC AGATAGGACGGGGTTGGTGATCATGTGGAAATGTGACACAAGAGGGCGCTTCACAACAACCCCACTGTGC AAGGAAGAGTTGAACCAGGTACCAACACAGTGTGTGTTCCAGCCAGGCATCGACACAGACATTTCTGCTG AGACGTCAGCCCTTGCCCGAGCAGCCGTCAGCGGAGACCAGAGGGCGCTAGACATGTTTGCGTGGGACAA GAGCTCCCTCAAGCTTCCTGGATCTAATACGGATGGCTTAACCTGCTACGTCGGCGGCTCTGAAGGCAAA GGCTATTTCATCGATGATAAAGGAGCCTGCAACCAGGTCCTGACCACAGATGGGCCAATTAAGAAGCTGC TGTTCAACAGACATCGTAATATCCTGGTAGCAGTCACTCAGTCACTCATGCTAACTCAGTACAGTCTGTC ATCAGATGGCAAGACCACAGAGACAATGAAGGTCAAGCTGAGTGGTAAAGCGTCCGAGACAGACTGTGAC ATGGTCTGGGCAGGCAAGGGCCTGCTAGCAACGGCTAGCGGAGAATGTGTTATCAGGATGTGGGATTTAG ACAAAGACGATAACTACATCTTGGGTCTGGATGCACAGCAAGGCTTTGAGACAGGAGAATGCATCAACTG TGTTGCCTACTCTTCCAAGAAAGGAGTTCTGGCTGGTGGGACGGACAAAGGCCGCGTTGCCATGTGGAAG TTTGCCCCATCCCAGGGCATCATGGCACGGAAACAGGACGGAGAAACCAAGTGGAAACTGCAGGCCCCAT CTGTGTTGGAAGGGAACATCTTGCAGGCCAAGTGGGGTACCAGTAGGGACTACTTGGCCCTCAATAGCAT CGGTAGTGTGGTCATTCTCCATGCACTCGATATGAATGCCCACATCAAAGATCAGGTTGCTGCTGTCCAG ACAGGACCCAGCTCCATGACCTTAGACATCCTGGGGTCAGGGTCGCACCACGAGGTCAAGACAGACATTC ACATCAAGGGCATCTACACTACCAAGGAACATGTAGCTATCTGGAACGGCAGGAAGGTAGTTGTGTACGA CATCTCATCCGCTGTTAGGGCAGCTGGTACTTTCTCCACGGACTCCAACCTTGTGTGTTTGTACGAGCAA AACGCATACACCACCGAACCAGGCAAGATACAAGTCAGAAATTTCCAGGGCACAGTGAAGCAGCTGATCC CATTGAATGAGATGGAAGGGGAACCGGCTACTATGGACGTCAGCGGTCACTTCTTGGTGGTCACTACAAC CACCGGCTTTGTCAAAGTCTTTGATGTGTCCCGAAGAGAGGCCAAACCACACTGTAGCCCCATCAACCTG AGTGAGTCCGTAACAGGACTTGGCACTATCACCATGGGGAAGATCAACAGTAATGGCACCAAGGTCTGCG TCATAGCCAATAAGTCCAACGGGACCCCTGATAGTAAACTGTACGTGTGGGATTGTGACCTGGGTACTGT CACCGTGTTTGACCTGGCTACTGGCCGAGGTGACCAGGAAGATTACAGTAGTCAAGACGATGAAATAAGC GATGCAGAAAGGGGCCGTGCAGAAGCTGCCCATGACATCGCTGGTCGCTACCCTCAAGCTGTCCACTGGG ACCCCAACGAACCCAAGCTGCTCATCTGTCAGGCCAAGCTGTCAGAGTCCAACGACAAACCCGCCACCAA GAAATCCTCCCTGCTAATGACCATGAAAGATTCACCGCCCGATGTAATGATTATATCGCTGTTTAGTACC CTGGAGCACGGCATTGTGTTACAAGACAGCTTTGGTTTGGCACCAGCCTTTAGCCACCTGCTTGGACTGA AAGTACCATACTTCTACTTCATCAAGAAGGCTGGCGAGAAGAGCGACGGAGTCACCTCCTTGTCCCCAGG GTCCCTGGTAGCCAAGCAGGTCATGAGGGACTTTGTTGGGCTGGAGGAAGGAGACAAGAATGCCCAGGAG GCCATGATGAACTTCAGTTACTTCCTGACCATAGGTAACATGGATGAGGCCTTCAAGGCCATCAAGCTCA TTAAGAGCGAGACAGTCTGGGAAAACATGGCCAAGATGTGCGTGAAGACCCGGCGACTGGACGTGGCCAA GGTGTGCCTGGGTAACATGGGCCATGCGCGGGGAGCAAGGGCGATGCGGGAGGTGGAGAACGAAGCCGAG CTGGACGCCAAGGTAGCCATGTTGGGCATACAGCTGGGACAGTTGGAGGATGCGGAGAGACTGTACAAGA ACTGCACCAGACATGATCTGCTGAATGAGTTCTACCAGGCTAGTGGGCAATGGGGAAAGGCTATGGAGAC AGCAGAGCTGCATGATAGAATCCACCTGCGCACAACTTACTACAACTATGCTAAACACCTAGAGGCCAAA GGTGACATCAATGGAGCCATACCAAACTACGAGAAATCGGACACCCACCGTTTTGAGGTTCCCCGCATGT TGTTTGACGAACCCCAGGCATTGGAAGCGTACATCATGAAACACAAAGACAAATCTTTGAGGAGGTGGTG GGCTCAGTACATGGAGAGCACCGGTGAGATGGAGACGGCTCTTCAATTCTATGAGGCGGGCCAAGACTTT CTGTCTCTGGTCAGAGTCTACTGTTACTGTGGCAACCTGGAGAAGGCTGCTGAGATTGCCAACGAGACTG GCGACAAAGCTGCATGCTACCATCTTGCAAGACAGTATGAAAACCAGGATAACATCAAGGAGGCCATTCA CTTCTTCACCAGAGCCCAGGCGTACAGTCAGGCAATTCGGCTGTGCAAGGAGAATAACCTGGAGGATCAG TTGATGAATCTTGCGTTGATGAGTTCTAATGAGGACATGATAGAGGCAGCTCGCTACTACGAGACAAACT CTAGCACCATGGACAAAGCTGTCATGCTGTTCCATAAGGGTGGGCATTTCTCCAAGGCCTTGGAGTTGGC CTTCAAGACCCAGCAGTTTGGTGCCCTCCAGCTGATCGCGGAGGACCTTGACGAGCGAACAGACCCCATC CTGCTGAACCGCTGCGCCGAGTTCTTCATGGAGCATGGACAGTACGACAAAGCTGTGGATCTGATGGTGG TGGCCAAAAAGTACAACGAGGCCTTGGACCTCTGCCAGTCTCAGAGCGTACCGATCACAGAACGCCTGGC AGAGAAGATGACTCTCTCTAAGGACAACAAGAACAATGAGGTCCGTCTCAAGCTGCTGGAGAAGGTCGCC GATATCTGCTTCTTGCAAGGCTCCTATCACCTGGCCACTAAGAAGTACACGCAGGCTGGCAACAAAGCCA AGGCCATGAGGGCGCTCTTAAAGTCCGGCGACACAGAGAAGATCATCTTCTTCGCTGGAGTGTCCCGCCA GAAGGAGATTTACGTCATGGCGGCCAACTATCTACAGTCCCTGGACTGGCGGAAAGACCCAGAGATTATG AAGAATATCATCGGGTTCTACACCAAGGGGAGAGCGCTGGACTCACTGGCTGGATTCTATGATGCCTGTG CTCAGGTGGAGATAGATGAATACCAGAACTATGACAAGGCCCTGGGAGCGCTGAGCGAGGCCTACAAGTG CCTCAGCAAAGCTAAGATGAAGAACGCCTCGCTGCAAGAGGAGAAACTCGGCGCTCTCAAGTCACGCATT GGACTCATCAAGAAGTTTGTCACCGCACGCAGGGTGTATGATGAGGATCCTGATGAGGCTATGAGGCAGT GCCAGGTCCTGCTGGAGGAGCCAGACTTAGACAATGCTGTTAGGATTGGGGATGTGTTTGGCATGATGAT TGAACACTATGCCAGGCAGGAAAACTACAAGAAGGCCTATGCTTTCATGGAAGACATGCGCGGCCGCATT CCCACAGTCAACATGGCCTACTACGTCAACATGCGCACCATTGAGGCTGTACACAGGGCCTTGGACATCC CGCTGGGACGCGGCATGGGGGCGGAGACTACCGCTGGCCAGGGGGAGGACGATGACGTGGAGGAGGACGT GCAGGAGGACTTTCAGGACGATGAGGGTTTTTGTTGAGAACGTGCTGAACAAAGATTTGCCGAGAACCAG TCAAGAGCTGTATCAACGAGCTGGGTCAATGAGTCCGAGTACCGAGTCATGTAGGTCGAGTCTGAGTCAC GAGTCACAAAGGCCGAGTCTGAGTCACGAGTCACTTTCATATAGCACTAAAAATGATTGGAAGATACTGC TGGGCCAGGCACCAGTGTCTGGAAAGGATAATCTAGTACCGAACACTATCCAGCTTGCATTTATTTACGC AATATCAAGTGCGGACGCTGGGGTACATGTTTCGATACATTGATTTACCGAATCAATATATCGGAAACAA GCCAGCCGCATGCGCTGTTTATGTACATTACTTATATGCATTTCTATTGCACTTCACTGACTGTTTCACT CAGGAAAGGGTCATCTTCAAACTAATTTGTAATCATATCATTGAAAAAAATAAGTGATACGTGGTGATTT TGGTCCAGTCCCGAGTTACGCAGGTTGAGTCCCAGTCCAAGTCTGAGTCCGCAGGGTCAAGTCCGAGTCC ACATCCGAGTCATTTGTCATCATTACTTGAGTCCGAGTCACTGAAAATGGGACTCGAGTCAGACTGGAGT CCAGGTCATGAGTCATACACTTCTGTTTAAGGGTCATTCTATAAGTTTGGGGTCCCTTTTTTCTGTCCCA TGTGACATCTATCATTTTGTGATTCTGATGCACTCCTTAAATCTATAGTCCATCATTTGCAGCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
