Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
Login
Register
Contact Us
Citing Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
Antibodies
Morpholinos
Guide RNAs (gRNA)
Legacy Echinobase Site
Literature
Papers
Books
Citing Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Download Echinobase Data
Gene Page Reports
BLAST databases
Browse Echinobase FTP
BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038196549.1 PREDICTED: Patiria miniata oxysterol-binding protein-related protein 1-like (LOC119725188), mRNA ATGGACCCAGATGAGAATGCCTTGTCAGATTCGAGCAGTGAGCCCACTAGCCCCTTGCTCTTCTCATCCA ATGAGGAGAGACTTCTCTACGCCTCACGGCACGGTGACAGCCAGACTGTGCGACAGCTTCTCCGACAAAA CAATGAGGGCGCTATTCAACTCAACATTGACTGCAAAGGTACAACCAAGGCCAATCTAGGCTGGAGCCCG CTCCATCTAGCAGCCTACTTTGGACACGTCGAGGTGGCCACGCTGTTACTGAGCTACAATGCCGATTTCG ATATTGTCAACACTAACGGTGACACGCCCCTGCACCGAGCAGCATTCACTGGAAGACTTGAATTGGTAGC TGCACTCATTCAGTATGGAGCAGATGTCACTATTGTCAACGGAGAGGGTCACATGGCTAGAGACATCGCC CACGGCGACGACATTCAGAAGATGCTGATTGCAACTGAGCAGGCGCAGAAGTTAAAGTTAGAGCAACAAC TTCTAGCATCGTCCGCAGAGGGACTTTTGGACCATGTCCAAACGCTGTTGTTTGGTCCCCGCCCACCCAA CATTAACTGCGCCGACGTGACGGGGAACACGCCCCTGCACTGCGCCAGCTATCGGGACCAGCACGAGGTG GTCATGCTGCTACTGCAGCACGGCGCAAACCCCCGCCTCCCAAACAAGAAGGGACACACCCCCATCGACC TGGCCCAGTCGCAGCACATGAAGCAACTACTGAACGTTAAACCAGTCAAGGTCGTGCAAAGTGTGGATAA ACGTGAAGGGCCGTTACTGAAGACCAGATTCACAGGTAGCCTGAAACAGTACTGGGTCGTGCTGGACAGA GGTATACTAACGTACTATAGGAAAAGGGCTGACGCGGTGGCGGGCATTAAGCGTGTGGGCTTCAGATACC TTGATCATGCCGAATTTAAGACCAGCACAACTAACTCCAATGCTTTTGCGATACAGTACTCTAACAACAC TGTGCATACATGGCTACTGGATCCTGAATGCACCAAAGTATCACGAGAGGACTGGTTGAACGCACTGGAA GACCACCGGGCCTACAGCGATCACTACACCATGGCCAGCACAGTGGACGATGATTACGATGACGTCAGCG AAGAATTCCTGCCTCTAGGTTCCATCGCCGATTCCTTGAAAACTGCACAGGCACGGCAGAGAGTCTTGGA GCAATCTGCCGAGAGCTTTCAGAAACTTGTGGACCGTTGTCTGAGCAAGAAGGCTAAAGATCAGGCCTCT GCCCTGGAGTATATGGAGAGTTTGCCGGAAGTTCGGAGGCAACTAGCCTGGCTGACTGACGCATCCAAGA GTTTATGCAGCACTCTGGGGCAGTGTCTGGCATCTATGATGCAACAAGAAGAGTTGCGTAAAGTCGAGCT GTCGCAAGCCCTTGAGAAGTCCCGCGTTCTGCAGGATGGGCTGCAGGCCCTAGCCCTGGAGCACCACGAC TTGGAGCAGATCTCCAGATATTCTTCATTCAGTGGGACCTTCTACGATGCCAAGACGGAGGCCAGTTGCG CTGGCAGCCCAGAGAGCCTGAGCGACAGGGCCTCTCTGGAATTAACTGGTTCCCTCAGCGACTCGGATAG CTTCCACAGCATCATGGACGGAGTCACCGGTTCCCTGGACAGGTTACATGTAGCCGACCCCGAGGGTCAG AGGTCGGACCTCAAGAAGGATGGGCCAGAAGAGGAGACGAAACCCATGGCGAACGGGGTGACGGATATAG TCATACCTGGCTGCTCACGGACGAAGTTGCCCGCGGTCATGATCCGTCGGGACCAGTTCAGTCTCTGGAC TGTCCTCAAGCAGTGCATAGGCAAGGAGTTATCCAAGATCACCATGCCTGTGGTGTTTAATGAGCCGCTG AGCTTTCTACAACGGTTCTGCGAGTACACAGAGCACTGTCAGTTGCTGTACAAGGCTGCAATGAGCGACG ATCCGGTGGAGAGAATGAAGTATGTAGCAACGTTCGCCATGGCAGCTGGGGCTTCCAACCTAGACCGGCT TAGCAAGCCTTTCAACCCACTATTGGGAGAGACGTATGAACTAGTCAGGGATGACATGGATATGAAGATT GTCCTCGAGCAAGTCAGCCACCATCCCCCGGTCAGCGCCTTCCATTGCACCTCACCGTACTTTGAGTTCC ACGGATCTATCTACCCGAAGCTAAAATTCTGGGGGAAGAGCCTTGAGGTTTTACCCAAGGGCGTGGTCAC CGTGACTATCCCTAAGTACAATGAGACGTACACGTGGCACAACCCCAGCAGTTGTCTACACAACCTCATC GTGGGCAAGCTGTGGATCGAGATGTACGGCCTGTTGGAGATGACCAACCATAGGACGGGCCACAAGTGCT TCCTACACTTCAAGCCGGCCGGCTGGTTCGGCAAAGATCTACATAAGGTAGAGGGCTACATCACAAACAA GAATGACGAGAAGATTGTCATGCTGTTTGGCAAGTGGACGGAGTACCTGTACGCCATGGATCCTGAGAAC TACGACGGCGCGAGGAAAGAAGAGAAGAAACGCCACCACCGGCATGGCCTCGGCCACGGATCGGGCAGCC CCTCTGATCACGTCACGTATGACATGCCCCTCAATCCCGAGGGTGAGGAATTCAACAATGCGCAGCTGCT GTGGCACAACACAGCGAGGCCAGACAACTCCACACAGTATTATAACTTCACACTGTTTGCAATAAGACTC AACGAGCTGACAGAACAGATGAAGACTCACCTGCCGCCCACTGACGCAAGATTCCGTCCCGACATCCGAT GCATGGAGAACGGAGACATCGATTCTGCGTCCGACGAGAAGCACCGTTTGGAGGAGAAACAGCGGGCGAC GCGCAAACACCGCAGCAAGAGCAAGGAGACCTGGTCCCCGCTGTGGTTCAAGCTGGACATCAATCCCAAC ACCGGGGAGCAAGACTGGGTCCTAAAAGGCAACTACTGGGACCGGAAATACACCAAATGCCCCGACATTT TTTAATGACGAGCCACGAATTAGGCAAACCCCAAAGAACTAAAATAACTTGACGTTGGGATTGAAAGAAA CTTGCTGCCAGTAAAAAAAATCGGTTGAGAAAGGTGTTACATCTCGGAGTCGCAAAAATTGAGGAACGAT GTGAGTTTTAAGTTAGTGGCAGCTTAGCAGGAGAGGAACAGACTCGTCCGAACTTAGGAAGAATTTGCTT TGTGAGCAGCCTGGATTTGGCAAAACGTAAGGCCTGATTGAACGATGCTCTTGTGTTGATTACTGCAATG CTGTGAAGAAAAGCTCATCTTCTTGGACAAAAAAGTGCAAAGAGAATTCTTCAGTTTTTGGTTGAGGATT TAAAAGCCAAGCTTGGAGCGGCCAGCGAAAGAATTCACCCAAAAAAGAGACAATTTTTAATCGCAGCATG GAGCTCGCTGTATCGCGATGTAACTTCCTAAGCTGATTATTTGTAGCTAGTCATCGTCTGATCTTCACGG ACAAAAGGAAAACGAAAACTTTTTGAAAAGATGAAGACAGCTTATTAGTATTGGAATCAGTGTTTTGTAA GCCAGTCCATTCGAGGCAGGATTTTATTTGTCGTGGCTTAAATTCCAGCGGACGGAATGTGGAATACTAT TTTATTTTATTTTTCTTGCTGACAATGTAAAGAAAGCAAAGTTAAGACTTCATGCCAAATTGTTGGATGC TGCTACAGTAACAGTTCTCCCCAAGACTCATCCTGTGATCAGCATCATCCACAAACTGGGACCGGACCCC GACTGAGAATATTTCTATTCTGCCTGGATGGGATGCCAGTCCAACGCAGCTTACTTCTCAGCGAATCCTG TTACCCATTTTCGACACCAGGCATGCCGGATGGAAAGAGGTACAGGTAAAGTGGCTTGCCCAAGGACACA ATATATTGCCCGCGTCAGGATTCAAACCCCTAACCCTCTGATGACGAGTTGCATTTCCTTACCATCATAC ACCCAGCTAATCCTGTTTCCCATTTTTTTTTTACATCGGAGTCAAGTGGAGGTAAAGTGGCTTGCCCAAG GACACGACATACGGCCAGCAGCAGGTTTTGAACCCTGACCCTCAAATCAAGAGTTGCTAAGCAAATGTTT TCTTTGCTTGTTTTTCGGTGCATGAAATGGAACAGTCATGCCAAAACCCCATCCCAACACCCACCCCCTA CCCCATATCACCCCCTACATTCACCCCACCCCTCACCCCCAGCCCTACCCCCACCCCTTACCCCACGACC CAGCCCCACCCCCACAATCAAAAGGTATGTACAGTAGCCACATGCAAGTGTGGAGCCCTGTTTATTTAAT TCCAATAGAGATCTTGTGAAACTAAATCATTGTCCAAAAAATTCATTTGCCAAAAAAAATGACTTAATTT ATTCACACACACACAAAAAGAAACTGAGTGTCATTTTTTAAAAAACTAGAGAAACATACTAAAAATATTT ACTATGAGGTCACAATAATGTGTAATATTGTACAGTAAGTTTCCACTACATTTTTCTGTAACAAGATGGC TGCATTACTATATAACTGAAGTCTCTGTGAATCATATAAACTCAAAATTTTATCTTTTCACATCAATGTC TTTTGATACCGACATTCTCACATTTTCACCCTTGTCCACATGTTGTACTCCAGACCGGAGAATTCAGTAA AAAGAACTTGTATCTCTACATTTATATTTTGTGACCTTTTCCTAATCTATATTTTAATCCTGAAAAGAAA GAACATAAATTCTGTAGAGGAAAAGAGACAATGTGAATGAAAAAAAAAATTGGAAGTACTTACATGTAAT TGTACAAAATAGAAAGTTGGTAAATGTACATGTGTATTTTAACTTTTGTACAAAAGTTCTTGCAGGCGTC CTGCTTAGACATTAAGTGTGAAATGCTGGAAGGTCAATCATTAAAGCGAATGGCTCTTTTTGTTTTCCAC AAAAAATATATTCTCCTTAAAGATATAACTGTGTTAGCCATAACAGATTGCACGATACTTCCCAGTAACT TAAAAAGCTGGTCAAGAGTGCAAACAATTCTGTTCCGTTTTCGTGGCCCACTTTACAAAAGGGTATTATG TCGCAAACAAAGTTAAATTGAGTTATAGACATGGTTTGAAGGTTACGAGGTAATCCTATATGATAGCACT GCCCGGCTCATAAGTGAAACACTGTTCTGGCCCTCTGGGCACAGAAAAAAAAAAATTTTCACAAAATTGC CAAAGATTGCTACATAAAAGGATGGCAATTTCTTTTTAAATTTGTAAATGACAGTAATCTTGCCATTGTG GAATGTGTGCGATTATTTAAATTCGGACTGTGAACGGCAAGAGCGTGACAATATGTAACATTTTGTGATG GTGAATTATGTCTGTTAATTACGAAAACTTGAAGAAATTACTGAGTGGCTAAGTTTTCTTTTCAAGTTTT CTTTTCTTTTTAAAGTAATTCAAATGCTCAGTGGTAAAAAAAATATTCAGAAAAAAAATTTGTTGACTTT ATACACACTAAAAAAAATATTCTGAAAATTTCACCCTTTTTTTTCAATTTGTTTGTTAAATATAGCAAAA TTGCCACAGAATGTTCTGAAAAATAGGTTCACAATTAATATATTCATTTGCCCCCTATTAAAGCATGTGT GATGTTCTTCCTTGGGTATTATTGCAAAAATGGCAACATTTTTAATGGTAAATTATGCGATAGGTCCTGT ATACATGTACACGTACAAAAATATGAATTAACGAAACTTTTTGACGCCCAAAAGTGCCTCAAAACCACTC AAACCTCTGTCTACTTATTCTTTCCACATAATACACAAACTATTCGACATTTAAAGTCTACTTCAAGATA ATAAGTAATTGAATTTATATTAAGAAACAAATACGAGTAGGTCATGTGATTACTTCTTTGCATGTCATTG GTCAATGTTCTTTGCCCAAAATTAGAAAACATTTCAGCTTCCACTTTGTTAACAGCTCTGTTTTTGACAT GAAGTATAGGCTTGTGTCAAGGACAAGGTGCTGTACATTTTCATATAAAGATTGTCATTTTAACATTTGT TTTCCAAAGTTGTATGGTAGTCCAAACCTTTGATTATCTGATGTACTGTATCTGTGTAAAGAAGACTTGG AACCAGACCTTTCTTGGTGAAACTTTCAGTTGTCTGATTTTTGGGCCGCTTTTAAACTGTCCTACATTTC TGTAAATGTATCTTTTAGGGTCACATGTTGTAATCAAAAGTTATACCCTAGGGAGAGGGAGACATGTGAA TGTCTCTTTAATGTTTCCAGGCCTTTAAAAATGTTGTTACTGCAAATAGGCTACATCAATTCCTGGTGAC GCAAAACCCCAATTTACAAACTTTGGTGAGGGTAGGATAAGGTTAGGTTTAGGGGTCATTCAAGTTAGGA TTTTTTGTGCAGCAGTATGGGAATGTCTCCTTATGTACCATTTTCCATAGTGGTAATTATTTGTATAATT TTACCGGCACAATAATTTTTTAATTGAAATTACTTATTTTTGTCACGTCAGAGGTCAACAACAAATACTT GCTTTTGTCTTAAAAATATGAAAGCATAGTGAAAGGTAACATTTGCCAAGTAAGCTTCTAAATTAAAAGT CAGGATTTGTTGTCCTGACACTTCAGCGATTGATAAATCCTCAACTTCTTTTGCTTACTGTTTGGCCATA AGATCTTTTGTTTTAAGATTACTAATTCCATAGCTTGTCTTGTGCCCAGACGACAAACAATATCAGTAAT AAAACCCAAACCCTGTATAATGTTAGTGTACGTGCAAAGGCATTTTGAACAGTAAATTGGACGAGTGTAA ATAATTTTACATAACTGATTTATTAATTTCGCAGTATTTACATTTAAAGTGACAAAATTGTGAGGCATTA TTAAGACGTAAATGTGTAAGTATATTGTAAATTTAATCTTTATCAGGGTTTCTTGAGAGGGAGAGGATTG AAAGGAATTTATAAACAATTATGCAGGAGAAATATAGGATAATTCTGGCCAATTAAAACAATTTTAACGA AAGATCTAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
