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Citing Echinobase
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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT102256.1 TSA: Strongylocentrotus purpuratus WHL22.749736.0 mRNA sequence TATAGGGCTGATGCATATGCAGGAGTGAAGCGACAAGGCTGTAAAAGTTTGGACAATGCAGATATCAAAG TTAATGTTGATAATGATAGTATGTTTGCCATGAAGTACAATGAAGGCTCAACACATCTCTGGATGCTGGA TGAGAAGTTCTCTAGTGACTTGACAAGAGAGAAATGGATTAGCGCTCTGAGGGAGCATAGATCTTACAGT GAGAGATTGGCCAGTTCTTGCATCATCGCTGACTCTGACTCTGACGATGAAGAAGAAGGAGAAAATAAGA AGAAACTGCTTGCATTAAGCTCCATTCAAGATACCTTGAAGAATGCCCAAACAAGACACCACCTTGTGGA GGAGAGCATCAGGTATCTGTCGCAATGGATGGACGGACTTAAAGGCGACACCAGTAACAGTATCAACCTG GCAGAGCTGACCAAAAGACTTGAAGGCATCGTTGATAGATCACATGAAGCATGTAGCGCCCTCTCTAGTT GCATGGCTGTAATGTCCGGCCAGGAAGAGCTGCGTAACCTTCAATTGAGGCAAGAGCAAGAGCGGATCCG CAACTTGCAGGACGCTCTCCACGCCCTCGCACGGCAGCACGACAGACTCGAAGTCTTCTCCGCGAGCTTC TCCGCAAGCCCCGGGCTCAATAACTTCCACGATACCCAGGAGTTTGACTACGACGACCATGAGTTCCACA GTGTGATGGACTCTGGGAGCCGAGGCAGCAGCCCGACGGGTAGCTTTGATGACCGACTGAGCGACGTTGA GAGCTTCTACAGCGTCAGGATGGATAACCCTGAGCAAAGGTCGCCAACAGAGGGCGCCTTAGTTCAGAGT AGGATATCGGCGGATTCTGAGAATCATTCGAACAGTAAACAGCAGAGCAAGGAAGACCTTGTTGTTTCGT CAAACAATGGAGATTGCAATATAACCAAAAGTAGAGACTTGGGACAAAGTGATGTGTTTACGTTTGGCAG TGTGCCTAATATTATCATTCCAGGATGTGCAAGAGTAAGATTACCAGCCCCCATGTACAGACGAGACCAC ATGACCTTATGGACAGTACTAAAACAATGCATCGGCAAAGAACTCTCCAAGATCACTATGCCTGTCGTCT TCAACGAACCCTTAAGCTTTCTCCAAAGATGCTGTGAATACATCGAACATGCCCACCTCCTCGTCAAGGC CAGCATGTCTGACGACCCTCTCGACAGGATGAAGTATGTAACAGCCTTTGTTGTTTCTGCATCAGCTTCA AACGTAGACAGATTTGGCAAACCTTTCAATCCACTCTTGGGAGAAACGTACGAGTTATCAAGAGATGACA TTGACACCAAGATGCTGTTAGAGCAGGTCTCCCATCATCCGCCCGTCAGTGCCTTCCACGCCAGCTCGCC TCACTTTGAGTTCCACGGTGCTGTCCATCCTAAACTCAAGTTCTGGGGCAAGAGTATGGAGGTCCAACCC AAAGGTGTCGTTACCATCAAGCTTCCAAAACATGGTGAATCATACACCTTTCACAACGTCCTGATGTGTG TTCATAATCTCATCGTGGGTAGACTCTGGATAGAGCAGTACGGCACACTAGAGATCATCAATCACAAGAC GGGGCTCAAGAGTGTTCTTAACTTCAAACCGGCTGGCTGGTTTGGTCGGGATCTCCACAAAATTGAGGGT CATATCTCAGACAAGCAGGGGAAGAAGCTGTGCTATCTGTATGGCAAGTGGACAGAGTACATCTGCGCTG TTCAGAAAGATACTCCTGAAAGCAGGAAGGAGGAGAAGAAGAGGAAAGGAAGAGCAAGTGTATCAGAAAA GAGTCCTCCAAGTTCACCAGGAGCAGGGAGTGATCCAGTCGGCGATGGACCAGACAAGGACTCTCAGATC TTATGGCAAAATCTAACCAGGCCTGAAGAATCATCACAATACTATTCCTTCACATCATTTGCAATGAGAC TCAACGAAATCGGCGATGGAACGAAGCAAGCACTACCATGTACCGACAGCAGGTTGAGACCAGACATCAG ATTATTAGAAAATGGTGACATAGATGGAGCATCATCTGAGAAACACCGTCTTGAGGAGAACCAGAGGGCG AGGCGGAAGCACCGGAATAAGAGCAAAGAGACCTGGTCTCCTCTCTGGTTTAAGGCTGATGTCAACAGCT TGACCGGGGAACAGGACTGGCTCTACAAGGGCACCTACTGGGACAGGAACTACTCAAGCTGTCCAACTAT ATTTTGAAGTGCAGGTGAACCTGTGTAGAAAGACTGCCCAAGGGAATAGGTAAACGTGGCCGATCTTTAT GGACAGGTTGTTCATATGGTAGAGAAAGTAGAAACCTGAATGGTCTTTATTGGAAGGGTATCATAATATT TTCAATGTAGGTGCTCCTGTGTAGGGAAGGGTGGTGTTAGGGGGGGGGGGGCTTTCTATTTAGAATCAAG AAAAAGTGTTCTTAATAGACAGGTTGATGTAAAGAAGAAGATCCCTAATGGAGAATAAGAAAAGGAGCCT CTGTAGACAGGTGACCTACACTGCCAAGAGATATCTGACAGGGATAGACCATTAAAGGGAAACAAGAAAA GTGGCCTTTTTATGCAGGTTGTACATATCACTGGCTTAAATTAATCAAAATAAAAAATCATGATGGTTTG TGATTACTAGATAGAGCTATGAGTGTTCAAGGAAATAAATTTCTTCAATTAAGAAGTCTTTGGCCAGGTA AGAACAAGCATAAATTATGAGGGAAAAGCATTCTTCAATCTGACCAGTAGGCCATTATAATCTGAGACTG ATGCCTTCTCCTGTATTCATTAACTTGTTATTGTATTTCCAGAGTTTGATTGCAGACTGCATTCATTTAC TGTACATGTAGATGTTGTAAGGTATAACAAGCCATAATATTTGCCTAACCTAGCACACCTCAATTGTGTG ATCTGCAATCTGACTTTTGAAATACAAACAATCGCTACAGGTGAATGCACTCATAATCTCATCACTAGGC AAAGATTTGCCAAATGAAAATGCCCCTTCATTCTATGTTGGGGGAAAATTGCTAGGATTCAGGTTACAAA TTGTGGCATTATCATGAATTAGCGACATGTACAAAACAAGGGATGTTCACTGTTAGACGGATGATTTGAC AGTAGACCAGTTCACGGTTAGCACATGTCCCAAATGACCCCGAATATCCACAGATCTTCAAAACATTGTA CATTTTAAAATAATCACTCCTATAGCGATGGAGGTGCTACATACCTAGCCGTTGTTTCCCCTTTTCAAAG TATACTTCTACCTGTATATCATGGAGTGCACTGCAGGTGCATAAACAAATAATGATAACATAACTTTCAT GAGCACGTATCCAGTGTCTCTGTGTATTTCACACTTTGGTCTGCAACGACCTTTATCTGCTCATGCTCAG ACTGCAACTATGAACTGGCTTTTTGATTAAGATTTGTATTGATATGCACCACTACTTTTTGTACAAGAAC TGCTATCAGTCTTAACTGGATGTGTGAGACTCAAAAGTAAATTAGTTTTTCACTACTCTCATATTATGTA ATAGAACTGTTATTGTGTAAAATTAGTTTATTGATATACTGGAACTTTTGTTCATAACTTCAATAATGAA GTCTTCTCTGTCACTTTAGAAAACATTTTGTACAATGTAGGAACATTTCAATTAAAGTTTTTCCTGTATT TGCAAAAACAGATAGAAGGCCGTGTAATATTGCATGCACTGCACATATCTTTATGGTGTTAAATTCTACC TCAGAAAGAAACGAAATTAAAGCACTTTGTACAGCTGCTTTTGACTAGGCCTTCGAAATGATTTTATATG GAACATTTGTTCTCTTGGGTACTATATTGAAATTGTTGGGACCAAATTTTGGATATTGATGGAGAATTTT CCCTCGTCTTAGCTTTTGCGGCAACATTGTGCATGTGATTCCTACCATACTTGTTTCCAATTCATGCCTT CAATTATTAATTATAATAGGAATGTCTGGAAATGGCTGATATGGCAATTTATTGGAGATGAATAGCTTTG AATCACAAACCAAAGATGCTTTAAATGCTAGGAATCGAATGATATTTACAGTTAGACAAATTATATTGAC AACTTCCATAATTTTTCTCATCCATCACCCCCCCCCCCCCCCCAAAAAAAAAAGGAAAAAAAAGTGTGTT TGCATAAAGATTGTCATGGGATCGGTTGTCGCCTAAAATGCAACCATTTGCCTTTAACTTTTTAATTGTA CAGTACATATTTTGTCATGGCAGTAGTAATGTTCAGGTCTATCGAAATCATGCACACATATATTTGTTAT CTATGGTTTCTCTGTG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
