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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>NM_214574.3 Strongylocentrotus purpuratus Blimp1/Krox1b (blimp1/krox), transcript variant 2, mRNA TCAAGTTGGAAAGCACTTGCTTGCTGTTACCACCACAGAAAAGAGAAAAAGCGAAAAAAGAAGTCTAAAG AAATTCCCCGATTGAAACCGCAAGCTATTTTTTCTACGCTTCAACGAGGTCTTCGATCAGGTCTTCGACA GCCGCCACCGCCTGGCCATGGGGTGCAACGACAACGCCGTGCCGTCTGACATGACCGAGGTCGACTACCA GAAGAAATGCATTTACGAGGTCAAGGACCCCGAACGGGACCCCGCGAGCACGGAGCCGAGGTCGGTGACG TCACTACCAGGCAACCTCCGATTCAAGCGCCGGAATGAACAGGTGGTCGGTGTCCTAGCAGATGAGTACA TACCAAAAGGTACGCGGTTCGGACCCCTAGCTGGAAAGATTTACAGGGAGGAGGAGGTGCCTGAAGATGC CAACAAGAAATACTTTTGGAGGATTTACAATGGCCAGAAGTTCGTCCACTACATTGACGGTTTCAACAAG AAGCGAAGCAACTGGATGCAGTACGTCAGCCCCGCCGGAGCTTCGGCGGAACAGAACATCGTTGCCTGCC AGTACAAGACCGATATTTTCTTCTACACTACGAAAGCTGTCGAGCCGGGCCAGGAGCTGTTCGTGTGGTA TTGTACCGAGTTCGCTAAGCGCCTCGAGAAACCAGTTGTCGCCTCCAGAGCTAGTCCAGTTATGAAGAGA GAACCCGCCGTTCCTGTCCCTGCTCCTTCAGAGGATGTTCTCGACTTCAGTCGTCGTCCACACCAACTGT CTTCCACAGTCAATGATGTCAAGTCTTCCTTTCCAATGTCTTCAAGCCTTGCCAGAAGTTCTTCCGACCA CCTTGCTGCTGAGGCCGGAGTCAGTAAGACCTTGTACCCCAGCCTTCCACCCACCTTCGCCTTCAGCCAC CGGGTTGGATGCAGCCCACCGGGTACGGACATCAAACAGGAGCCACCAAGTCCAACGTCCACTTCCCCTA TGGGCAGTTCAACCCTGTTGCCGACCCAACCAGCCATTCCTATGTCAAGGATGTACCCGACCAGTGGTGC TCCGGTTGTTGTACCATTACCTATGTATGGCCTGTCACCAAACTACATCAGTACTGCAGGTGGTCTCACA TTGCTTGCCTCACAGCCCATCTACTCTATGCCGTCCAGCAGAATGATGGATTCTCGCTCTTTGGAACTGA CCAAGAATCGCCACATACAGCCCAAGCCTCTTTTAAATCGACCACTTGCAGATTCCAATGGCTATCTTTC AGAACACGAAGCCAGCATGAAGCAAGATGTTTCCAGGCGGGTCAGGCGCAGCAGTAACCCGAACTACGGC CATCGTGCTCTTGGCTACGAGCTTCCACGCCGCAACGGCAAGATTGTCTACGAATGCAATGTCTGCAAGA GGGAATTCGGGCAGTTGTCGAACCTCAAGGTCCACCTCCGCGTCCACACCGGCGAGAAACCCTTCTCCTG CGATCTTTGCGGGAAGGGCTTCACACAGTTCGCTCATCTTCAGAAGCATCATCTCGTTCACACAGGGGAG AAGCCACATTGCTGTCACGTCTGCGAGAAGCGGTTTAGCAGCACCAGCAACCTCAAGACCCACATGCGAC TCCACAGTGGGGACAAGCCCTACAACTGCAAGGAGTGCCCGGCCAAGTTCAACCAACAAGTCCATCTCAG GCTGCACAAGAAGGCACATCTTGAAGGCAACGTCGAACTCTTCATGGACTTCAGCGACGATGCTGACACC CCAAGCACCGATGGGTCCGTCATCGCTGGTCTTCAAGATCACCTGGCCAGCACTGAGGTCACCGACTATT TCGGGAATACCGATGTGACGTCCCCTAGCAGTCGAGATCGTCTCGACGATGATGAGGAGGACGACGAAGG CAAGTTGATCATCCAAGAGAATGGGAGATCGCTGGAAACATCACCCATGGGCTACATGTTTCGATCTGAT GCCATGGACGAAACGTCTCAAGAACTCTGCGACTCCCCCTCGACTGGAATAATCGCGTCCAGCTGCAACG GCGTAGAAGACGACGCGATGGAAGTCACTAAAACCGACCAAGACCAATCAGCAGCCTTTGAGAGCAAAGA CAACGTTGCCCTTCCCTTGCTATCTGAACTCCCTGAAGCATCATCTCATGCAATCAAAAGATCCCATCCT GAACTGGAGTTCGGATCAAGAAGCAAGTTATCCAAGTCCAATCCTGCCCTCAAACTCGAGAACGTCGTCC AGAAGATCCTCAATCGTACGAACAAATCATAGAACTTCTTCTTAAGTCGAACAATTTTGATTTTATCAGG GTGCTCGCTTTGGCTAGTAAATGTTAAATTACCAACATAAGAAAAATGCTCAAGCTTGAATCTTGGTTTT CCGACTTGTTTAATGTATTATGGATTTGCGATCAGACTTGAATAGACAATCAGGAAAATAAGCAATTTGG ATGCTACGAACAATGTCAGCTCAGAAACAAGCATAATAATATTAGTCAACAGACTCATAATATTTTGTTC GAAAGAACGCATTTGTATATATATTGAATATTGCCAACTGTACGATAGGTGTATGAATAAATATTAATCA TACTGAAATCATTACGCCAAAATAAGCCGATTATGACTATCAATGAGTTAGTGCCATATTCTGCCGAATC ATCTTTATTTTGTATAAATTATTCTCTATTGATCATAGCTAAAATAAGAATAATACTATTTTTGTCAAAT TAATGATTGAAATTTGGACATGCTCTGAATGTTACTATTTTACCTGTGATTTCAAATCAGTTCACATGAG TTAATTACCGATTTGAATACCTCTATAAGACTTTCCGCATCGAACGGATTCTCTGTATTCAACTTTCATC TTGAAAAGTTAAATTATATATGTGTCTTTCAAAAATGATCTGTGTTAACATTCATGTAATTATGTAAAGA GCAGGAGTTTTCTGCTTCTTTTGCTTTGGAGAAAATTGATTTAATTATGATGTGATTGCAGAATGTTTTC TGAAGTTTTAAACGTTTATTATAGTCTACCGAGGTCTACCGATGTAATATTATTGTCTTTCAAACCAGGA AGTCACAAGCAATTATGAAATTGTCTTTCGCTGTATAACTGTCTGATCTGTAGAAGTTGTAGGATTACTC AATACAATGGATGTAAAACGTGATCAGAAAGAATTTCAAGAAATTTAGATTTAAACAATATCAATATCCT TGTTCGTAACCCTTTGAAACGTGCGAATATCGCAAAGACAAATAGCATTATGTGAATATGATTTTCAAAT AATATGCATAAGGGTATTTAAATGACCCTTGAGTCGATTTCTTGAAGGCCTTTGCGATCATGATGTAAGT TAGAGTATATAATTTAATCAAGAGTGCCAAAACATGCAGTAGCGGGGTAGCGATACATTGCGGCCCGAAT TCACAAAGGACGTTTGTCGACAAACCTAGTTTTATGTGCGTCACAATTATGACGCGTATCGACGCGTTTT TACAAACCAAGGGGTCTGTATGCCCCCCCTCATTCCAGTATCATATTATAATCATGTGCACAAATGTAAT GCTCGACCGTCAGCTTGCCGTGGTGAATGAAATATTAATCAATTAACTAATTAGTATTGATATCAAGATA TTTTCTAAACTAGACACTAGCGAAACTTTTATGATTCGAACCTTAGTATTCAGTTATTTATTAATGATAG TCACAGGCAAGGTAATTCAAAATAGGATGTGTATTCTCACGTGGTCTTACTATATTTAAGATAAATGTTA TTGTTAGAAGAATAGTTTATTTTCTATGTATATATATGTGATGTTCTTTAATACAACTCATGGGATAATA GCAGTGTGCCTAGCAGTGCAAGGCGTTTACGTACATTAGATCTTCCAACAGGATTGTGCCTTATATTGAT GACATTTTTTTGTATAAAATTGAAAGTGACATTTTTGCCAATAAAAATTATGTTTATGTCAACAGTGA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
