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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030989238.1 PREDICTED: Strongylocentrotus purpuratus ets DNA-binding protein pokkuri (LOC591714), transcript variant X1, mRNA CCTCTTCCGGTGACGTCGCTATACGGTTACCTGGAATTTCCTGGAAACTTTTTCATCGAATTTCCGGTAT GGAAAATCGAGCCACTGCCATGACCATACAGTCAACCAGCATATTTTCACACGGCCGGTACAGCAACTCT GCGTCAGATTTACTGTTCTTGTTCTATCTGCACGTCTCAAAGTGGCATTTTGGAACCGGTTGACGAAGGA AAATCAAAATAAAGTCGAGATTTAGACGAAAATATTCCGCCTTTAGAATCAAAGAAGATGTCTTAGGAAG GGAAGCCTCCTGACCGCATCTTGAGAGTCTTGCAGCTCCGCCCGACCTGGAATCGTCTTCCTGGACCGAC GAAGGCGTGTTTTCATCCCACTCCTGACGCCATTAAAGCGCCCCAGCCATGGACCCGGCCTCTACCAGAC AGGCGCAGCACCACCACCATCACTCTCCGCCTCCCATGATGCAAGGCAAAGACCATCATCATCATCACCA CCAGCGCTCGTCGGTAGGAGCAGAGAAGGCCAGTGATACGATGATACTGCAGACAAATTCTCCCATGCCT ACAAACCAGGACCCGGTAAAATGGACCAGAGAGGAGGTCTTGAACTGGTTGAAATGGTGCCAAGAGGAGT TCTCCTTGGACAGTGTTAACGCCGAGAAGTTCACCATGAACGGTAAAGCGCTCTGCCTCATGCCCAAGCA GTCGTTCTGCGACCGGGCGCCGGAATGCGGGGACATCCTCTACGAGCTTCTTCAGAAATTATTCCGTAAA GAATGTCGATTTTATCATCCAAATTTGTCAGACCAAAGAAGATCGCCAGACCCACAGTTTAACAGTAGTA GCAGAATCAGTGGAGCGGCAGAACATCAGAATGTCCCGGGATCACCGCGGGAACCGATGGGTTACCAAGG CAACCTGACGATACCTCCTTCAAACTCCAGCCCACGTCTACCGATGGATCTCTCAGCACAGCCAGAAAAG TCCAACACACCATGCAGCGACTCAGGTCATAGTTCACCCGACACAGCAGAAGACCTCAGACAAGCCGCAA CCAACAACCAAGCATCCGCCATCCACTACCGCCGTCAGAACGCGCCCCCTATGATCACCCTCACGTCGTC CAACCGAAGCTCACCCCAGCAGCGCATGTTCGAGAAACAACCCTTGCGACTTCCCGGCGGGAAAAACCTC CACGACAACTTCAGCGAGTCGGTGATGGATTCCTCTCAGGTTCCGCCGTCGCCCACGAAGCGGCTTCGCA TGGACTACGGGCAGCAGGGCGGGGTTGCGACGGCGTTCCCGCACGTCAATACGGCGCACATCGAGCTCAG GCATCGCGCCAATACAGCTGAGCGGATGGAACAGCAGAGCGTACATCCTGGATCGCACCACAGCCTGCAT CCTCAGACGCACCCGCGGCTTTTGGGACGACGCAGGTTAAGCTCCGATGATGGCCTTGCAGCCGGGAGAG CCACGTCGTCGTACGGGGTCGAACGGCACAGTACCGGTGCCCTGATTGGTATGGCGGGACTGTACAATCA TGGTAATATACCAGCTATCCCGGTGCCTTGCTCGGTACCTAGCCTAGCGGCGGGGTCAGCCATTCTGTCA AGGTTGCAACAAAGGAGAAACAGCACTGGAGGAGCTGAAGGTATAGGTGATGGCCTTGGGCAAAGCCCTC ATCAGCATCCAGCGAGCATCTCATCGATGCCACGACGACGGAGCATGGATCCAGACGATGTCTTTCTCCT GGATGAGGAAGGGTTTGAGACTCGAAAAGCTGCAGGTGGTGACTGTCGTCTTCTCTGGGACTTCCTGGTC CAGCTCCTGAAGAACGAGACCTACAAGCCCTACATCCGCTGGGAGGACCGACGAGAGAGGGTCTTCAGGA TCCTGGACCCGGTCCAGATCGCCAATCTCTGGGGCCTGCAGAAGAACAGGACCAACATGACGTACGAGAA GCTCTCCAGGGCGCTCCGGTACTACTATAAGATGGGGATTCTACAGAAGGAACAGGGGCAGAAGCTAACA TACAGGTTTCTGCAAGACCCCAAGGACATCGCCAACAGTCAACGCTTTTCAAAGATGGCCCGTAACAAGG ACAATGCAGAACATTCCGAGGTCACGGGGTCGACGACCTCACCGATACATCACTTCTCGGCGACATCATC CACCTCACCACAGATGCTTTCATCTTCCCCTTTGACATCGGCATCGACATCGACGTCGACTTCATCGCGG TCATCGGCCATGATGTCTTCGTCAATGGCACCCTCATCGCTCGGTTCAAGTAGGGTGTATTGCCTGTCTA CTCCCAGCCCACACTCTTCATCTATCCATGTCTATCCTGACCCCAAAGACACGTGTCAAAGTTCATCCCT AGGTCAAAGGTCGTCCGTTCACATGGCTTCGACGTCGTCGACCCCCTCCCCGTCTCCTCCTGAAGCTGCC GACGACCCTGTCGCCATAGCGACGCATCAGATGGAAGGCGTGTCCATGATGGCACTTGCGTCGCCGTGGC AAGGTGGCGCCTCGGGAGCGTCGGATACCAAAGGTCAGGGGTTAAAGGTCAAAGAGGAACCCAGTAGTAG ATCGAACTCGCCAGACATGGTATGCTAGAGGATATACGGACCTTTGTCTCTCTGTAGTTGGAGAATGTGT ACCATGACATCACGTCATAATGCAAATACAGAACAGTAACGAACATTGAAGTAAAGATCAGTATCGAACA GTAAAGAATGCATTAATATAGAATGTCTTATGTTTACTGTGTATATGTAATTCCTGTTGCCTTTGACTTT AAAACTAGTACCAAAAGTTTCAGGCCAAATTTGGATATTTAAATGATAATCAAGATTGTCTTAATTGTTC TGAATTCAAACTACCCAGCATATTTTTGATAGTAACTTGTGTTTATATCATTATTGACGTATCTCAGAAA ATATTGATATTTCAACATGATCGTTTCGCTTTAGTGCACCACATCGAAAGTTCACATTTTAAGATCTACA ATTTTTTTTTAATTGTTTGTTTGAAATCATATTGTTTTGCAATTTGATTTTGTAGGGCCTGCCATTATTC CAGAATGAATGTCCAAGCTAAGCCAAAGTATCTCATTTTGTTTGAAATTAAAGAATTGCGTTGCGTTCAT CATCATCATATTCAGAGTAAAATTACTGCCG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
