Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030984505.1 PREDICTED: Strongylocentrotus purpuratus intraflagellar transport protein 140 homolog (LOC589151), transcript variant X1, mRNA AAAATGCGATCTGTACGTACATCATCAAATTGGCTAATCACATTTTTCTCAGTAAAATGTAGCTTCACTT GCCAACCGAAGAACTAATGTGAGGACTTTTACACTTTGAAGAAAAATTGATTGATGTACCAGAAAGGAAC AATTTATTTGACCACTCAGTGCAAAGATGGCCATTTTCTTTGACCATCGAGTCCAGTCAGGGTCATCTAG CCATGTAGACATTGCATGGCATAATGAGCAACCTTTACTGGCTGTGGCCATGAGAGGACAGCAGGGGGAA GGAGGTGTTGTTCATGTTTTCAATGAAGAGGGCGAGCCACTTCCAGTGGCGAGCCTCCAGCGCTCATGCT ATTCCACCTCGCTGGCCTGGCACCCCACCCATCCGTCGGTGGCCGTGGGCTGGGAGAGCGGAGAGATTCT GATCTGGAACGAGCAGGATCAGCAGCTCCAGGAAGCCAGTAAGCTGCACAAGGCCCAGGTTTGCCTGCTC CAGTGGAGCGCCAGTGGTCAGCGCTTGCTCTCAGGAGATAAGGAAGGGAGGTTGATCATGTGGAAGAGTG ATGGGAAGGGGCATCTCTCCAACAGCCCTATCAGTCAGCTGCCGTCCCAACAGACCCCCACTCAGTGCCT CTTTCCCCATGGTGGACCAGGACAGGAATCAGGGAATCGGAGTGGAAGTGTACCATGGAATAACAGTATC TTCAGCAAGCCTTCTTCAAACAGTCTCATAGGGGATGGTAATGCCTGCTTTGTAGGGGGAGAGGAAGGAC ACATTGTCTTTATGGATGACAAGGGCAATATGTCCCAGGCGGTGACGGTAGAAGGCCCCATCAAGAAACT GCTGTACAATAGCCACAGGAATGTCATGGTGGTGGTCACCAGATCAATGGCTCTCTCACAATACAGTGTG TCACAGGATGGCAAGCTTACAGAGATGATGAAGGTGAAGCTGAGTGGCAAGCCCAATGATAGTGACTGTG ACATGGTTTGGGCTGGTAAGGGTATTCTAGCTACTGCATCTGGAGAGTCATTAGTCAGGATGTGGGATCT TGATAAGGATGATAACTATGTTCTTGCTCTGGATAAGAATGTAGGCTTTGAGATGGGTGAAAATATCACT TGTGTTGCATTCTCTTCAAAAAAGGGTATACTGGCAGGAGGTACAGACAGAGGCCGGGTAGCCATGTGGC GCTATTCCCCTGTTCCAGGTGTCTTGGGGCGTAGACAGGAGGGGGAGACCAAGTGGAAGCTGCAGGCCCC CTGTAACCTTGAGGGGCAGCTGGGGCAGATCAAGTGGGGGTCCAGGAGGGATCTTCTGGCTACCAATAGC TTTGCTGGGGTGGTGATCCTCAATGAACACATCATGAGTGCCAGTATGAAGGATCAGGTTGCAGTAGTCC AGGCTGGACCCAGTGCTCTCTCAGTGGATGTCTTTCCTAATGGCTCTCATCATGATATCAAGACAGACAT ACATATCAAGGGCATATGCAACACGAAGGACCATGTTGCTGTATGGAACGGCAAGCAGGCAGTAGTCTAT GAGGTCAGCCAAACCATCAGGGCAACAGGGACCTTCTCAACTGACTCCAAGATGGTTCGTATCCATGAGC AAAATGCCTATACCACGGAACCAGGAAAGATACAAGTCAGGACATTCCAGGGCACTGTGAAGCAGCTCAT CTCCATGAATGAGAATGAAGGGGAGCCCTGTACCATGGATATGATGGGGAATTACCTAGTTGTTGGAACT TCAGGAGGATTTGTGAAGATGTATGATGTGTCAAGGAGAGAGGCTAAGCCTCACAATGCTCCGAAGAACT TGATGGATGTTATACCAGGCATGGGAAGCATTCTCATGGCTAAGGCTAACTGTAACAGTACAAAGCTGGC CATCATCATCTCCAAGAGTGATGGCACCACTGACCCCAAACTCTATGTGTGGGACCCTGATCTGGACACC TTGGGTTTCTTTGACCTCAAGACAGGTCATGGTGACCAGGAGGATGAGCCTCTTAGCAAGGATGATGACA TCACCGATGCAGAAAGGGGTCGTGAGGAAGCCGCCCAGGACGTAGCAGGCCGTTACCCCACCAATATCTT CTGGGATGCCCACGAACCCAAGCTCTTGGTATGCGAGGCTAAGCTGTCCCAAAATGAGGAGACCAGTACT ACCCCTAGGAAGGCAGCTTCCCTTCTTAGCACCATAGTCAATACACAGCCTGAGATGATGGTGGTATCTC TCTTCACAACCTTGGAGCATGGTGTGGTTCTCCAGGATAGCTTTGGGCACATCCAAGGTACCTTACTGGG TGTAGAAGTACCCTACTTCTACTTCATCAAGAAGGCTGGGGAAGGGAAAGCAAAGAAAGGAGTATTACCT GGGGAGAAGATGGATGACCCGGGACCAATCTCCTCATCTTCGCTGGTTGCTAGGCAGGTGATGAGGAACT TTGCTGGCCTGGAGGATGCAGATAAGAGCGCCAGGGATGCAATGATGAACTTTAGCTACTACCTGACCAT TGGGAATATGGATGAAGCCTTCAAAGCCATCAAACTCATCAAGAGTGAATCTGTATGGGAGAACATGGCA AAGATGTGCGTGAAGACCAGACGGCTGGACGTGGCCCGAGTGTGTCTTGGTAACATGGGCCATGCCAGGG GTGCCCGAGCCCTCAGAGAGGCAGAGAATGAACCTGAGCTAGATGCCAGGGTGGCCATGCTTGCAGTTCA GCTTGGTCTACTTGAGGATGCTGAGAGACTGTATAAGAACTGTGGACGCTACGACCTTCTTAATGCATTC TATCAGGCTAGTGGACAGTGGGGAAAGGCCATGGAGACAGCTGAGCTGAATGATCGCATCCATTTGAGGA CCACTTACTACCACTATGCCAAGCATCTTGAAGCAAAGGGAGACATCAATGGAGCTATTCCAAACTATGA GAAGTCTGATACCCATCGCTTTGAGGTTCCCAGAATGCTGTTTGATGAGCCACAGGCCTTAGAGGCGTAC ATTATGAAGACAAAAGACAGAGCCCTGAGGAAGTGGTGGGCACAGTACATGGAGAGTACTGGAGAGATGG AGACAGCCTTGCAGTTCTATGAGGCAGCCCAGGACTACCTGTCCCTAGTCAGGGTCTACTGCTACTGTGG TAATCTAGATAAGGCTGCCGAGATTGCAAATGAAACAGGTGATAGAGCAGCATGTTACCATCTAGCAAGA CAGCATGAAAATCAGGATAACATCAAAGAATCCATCCATTTCTTCACCAGAGCCCAGGCATACAGCCAAG CTATCAGGTTATGTAAGGAACATGATATGGAAGACCAACTGATGAACCTAGCTTTGATGAGCAGCAAGGA AGACATGATAGAAGCAGCCCGATACTATGAACAGAACCCCAACACTCATGATAAAGCTGTCATGCTGTTC CACAAGGGTGGACATTTCTCTAAGGCTCTTGAGCTTGCCTTTGAGAGCCAGCAATTCGGCGCCCTACAGC TCATCTCTGAGGACCTGGATGAAAGAACAGACCCTGTGCTACTCAACCGATGTGCCCAGTTCTTCATGGA GCACGGCCAGTATAACAAAGCTGTTGATCTACTGGTTGTCGCTGGAAAGTATTTTGAGGCCTTGGAGCTG TGCCAGGACCACAATGTGAGCATCACAGAGCGCCTTGCTGAGAAGATGACCCTCTCCAAGGATGATAGCC AGGGTGACATGAGGCTGAAGCTCCTAGAGAAGGTTGCTGACCTCTGCTTCCTCCAGGGCTCCTACCACCT GGCAACAAAGAAGTACACTCAGGCTGGCAACAAGGTCAAGGCCATGCGAGCGCTCCTCAAATCTGGCGAC ACCGAAAAAATCATCTTCTTTGCGGGTGTGTCCCGTCAGAAGGAGATCTATGTGATGGCAGCCAACTATC TCCAATCCCTGGACTGGCGGAAGGATCCAGAGATCATGAAGAACATCATTGGTTTCTACACCAAAGGCAG AGCTCTTGACTCCCTGGCTGGCTTCTATGATGCCTGTGCACAAGTTGAGATTGACGAGTATCAGAACTAT GACAAGGCCCTTGGAGCTTTGACAGAGGCTTACAAGTGTCTGAGCAAGGCTAAAGTCAAGAACCAGACAC AGATAGAGGACAAACTTGGAGCCCTCAAGCATCGTATTAGTCTGGTCAAGAAGTTTGTCCAAGCAAGAAG AGCTTATGATGAGGAACCTGAGGAATCAATGCGACAGTGCCAAGTCCTCCTTGAAGAGTCTGAACTAGAC AGTGCTGTCCGGATCGGTGATGTCTATGGAATGATGGTTGAACACTATGCTAGACAGGAGAACTATAAGA AGGCCTATGCATTTATGGAAGAGATGCGATCAAGGATAGCCACTGTCAACATGGCCTACTACATCAACAT CCGCACGATTGAGGCAGTGCACCAAGCACTGGACATACCCCTTGGGCGGGGTACAGGGGCAGAGAAGAAG GGTATGGTGATGGGCAATGATCTAGGACAGGATGAGGATGATGGAGAGGAGGTGGAGGAAGAGGTGCAGG AGGATTATAATGAGGATGAGGCTTACTGCTGATGTTGATATTAATCAATTAGTTGGATTACTGTATAAGT AGTTATTTTTGTGATTCTCACTAAATACTTTTTGATGGCAAATTTAACACGCAAAAATATTTCCAGCAAG TAATGTCACATGTTGAATTCACTTTCCTGTTGCTTGTCGCACACGGCGTTTATACATAGTAGCACGAGCT TTCATCTGGTCGTAGGGCGCAGCCTGCGACCACTCTTTAATAGATTATTTTCATTTATTTCTTTAAAAAT TCATTCTTATATCATGATGATTGTGATAATCATTAGTGAGTTTATGATCCACGGAAATAAAATAATAATT ATTGTAAAGAATATAATTTTTAGTGGTTGTGGCTTTACGCAAATTGATCTCCTCACAAATTTGTCCTTGA AACCCCTGATCCAAGCCATTATCTTTTTCATACATACATGATGTAGGCATGTATACTACGGTTAAACCTG TGTCTGAAGATGGCTCAGTAGTGACTAGAAATCCAAGAGATTAGGGAAATAAAAAATGTTATTCTTGGTT CTTCAAGGTCAGGGGTCATCAGACTAAATATCTTATGTTGAAATGCTCTTGTTTCAAATTCTCTGTGTAG GAATCAAAAGCAACAACTCTTTACGTGTACCTTCTTATAATAATCAACCAGTAATATACATGCCTGTTTA CATATGTTTTGGTACATTATTGCTGAATGAAAGGGATGATATTTCTGATTTTCAGAATACTATGGTGCCT GATTTGATGATAGAACAGGCTGTTTTCACTCTGATGATATAAAATTACTTTTATAAGGGTTTTCTACTAG ATTGCTTTTGTTTTGTCATTCAAGAATTAAATTTCACCTTTTTCCTTCTCTATTCAAAATTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
