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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
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BLAST
Echinobase BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>JT105202.1 TSA: Strongylocentrotus purpuratus WHL22.342226.0 mRNA sequence CTCCCCCACACACCGTACGATATACTACTCAATGAACTACGAGTTACTCATGCGCGCGCTCTAGCAACTC TCCGCAGTTCGATTTATCAACAAATTTTTCAGAAGCAGTAAAATTACCTTTCGAAGAGGTGCGCTGAAAT TTTACTCTCTCCAGTTCAAAGGTTGGTGAAAGTTTAGAAGCCTGCAACCTTGCTACTTCGTTCTCGGAGG ACTTACTGCATTTAATAGAGTCATCCATGAAAAATTGGTCTACATCACTCAATCGGACTAGAAACGCTTT TGCTTTGAAGAGAATTGTTTAACGGGACCATACCTCGGCTCAACTTGTCGACAAGAAGGCGACTGCATTG CTTCGCCGGAGCAACTGGGTATTTGTAGTTCCAAGTACCGGCGGCGGTCTCCTTTGAACTTGGGGGCTTT TACGAATTTCTGCAACTACCAACGATTTTAGAAGGAAGGAATTTAGGATTTAGACGCTCAGAATGGCGGC TCCTTCTGCAATTTTAAAATACCTGTTGTCAGTACTTGTGTGTTATGTGCTTTTCGCCGTTCCAAGTCAG GGAATATACATCAAAGACAGGAGCAGCAGGCAGAGGGGGAGCGAGAGGACAAGGGGGAGGGACAACCCAG GCGATGATACCTCGGTGGAGGAAAGGAGGAGAGAACCGTTCACAAGAACACTGGTGCTATGTGAGGCAGA CAGGGAGTGCCCGTACAAGTACTACTGCCACAGCGGCGAGGGCCACAAGTCATGTCTCAGGTGCAGAAAG TCGCATCGTCGTTGCCATAGAAACAAGATGTGTTGCCAGGGAAACACGTGTGTCGATGGTCGCTGCATCC CCCATCAGTTCCGATTCGACGAGGCCTACAACACCGCCGTGCAAAACTTCGAGTCGGAAGTGAACGAGGA GGAGGAGAGTATCCTTCAGGACACCAAGTTTAAACTAAGAAAAGCTCGCCAGGGTGAGCAGTGTTCTTCA TCTGTATCGTGCGAGGACGGTTTGTGCTGCGCTCAACATCTCTGGTCCAAAATGTGTAAGCCGATGCTGG AAGAGGGGGACATCTGCACCAAGAAACGCGATCGTCTCACGGATGTCTTCCAGCGATGCGAGTGTTCGCA AGGTCTCTCCTGCAAGCGCGATTCTGTTCCCGAACGCCGCCTCCACGTCTGCCAAGCCGTCAAGCACCGA TCGAGTGGCACCAGCACGGAACGAGGTGGCGGAGAGGGCGCTGCACAGGGTGAAACCTTGTCACAGCGCG AGAGATTACTGTCGCTTCCGGTCGAAAAGATTCGACCGCTTCCGAGCAAGAACGACGGCGACCTCCTTGG CTACCTCTCGGCGGAATCAGGCGAGAAGCTCTTCGACCTCGCCGGCAGAGGCGAGCGGTGGATGATGGGG CGGTCGGCGGAGAAATTGAAAGGCACGGCGTACAGGGACACAACCGAAATTACGCGAACGGAACAAGCCG ATATTGAGGCCAGCCAGTTAACTGTATTATGATCACCATGATCCTTCTGATGACTTGATGAGGTAGCAAG ATGGTGAGATGCGAATGGTATGATGAGCATCTTGCGCAAAATGATGAGAGGATAATCCGAATATGATGAG GAAGACAATCATAGGACGGGCGCCAGACCTTTGACGGGGAGTCGGAACAGTCAGACATCGCTAATTGGAA AAGTAAACCCAACTCCTTGATGAAGCCGTTTCACTGCCGAACTCTCCCTGTCTGTCGCCGCTCTTTAAAA TCTCCTCAAGCAGTGTCGCCATTCGAAAAATCTCGCTCGATTGTTCCACTTTATGAAAAATAGATAAAAA TATGATTGGTGCGGTATGGAGAAAGCAAACGAGTTATAGAGAGTCGCTTGTCGGTCATGATGAGCTGAGT TATGGTATCTGTTTAACTAAATCGATAATACAGAGGGTCATATTGCGATGTCATTTAACTGCAGGTCTTC CAGTGCGACCATGCAAAATGCAGAGATGAGAAAATCTAAGTAAGAAGTAACTTTCTCTAATGATTAGGGG GTAAGATTCTGGCTTTATTAGTCACAGTTTTGTATTTAATATAGCATTTCATGATAACCAACAAAACACT TAATTATATAAAAGGATATTTTCACAACTATTGTACTTAATTTATTAATCATGGTATTAATTTATGAGAC ACGTAACGTTAGTATGTTTATGTTTTAATTTGCATCAATCTTAATCAGGGCATCTAGCCTCGAAAATTGC ACTGGCAAAAATGATAATAAGTGTATACAAAATCGATGTTAAATTCTAAAGAAATTGAAATCTGTATTCA GATATGAATATATCACTGACGTTTAAGGCAGTGCACATGTAAAACTTATCATTGTATTCATGTGGCGTGG ATGACCAGTGTGTGACGTAACAACATCAATCATGTGATATCTCTCTATTGATTTAAGTATATAACCCAAC TCTCAATCACGTTATGTCATGTGATACTGGTCACGTGAACATGTTGTATGTCATGTGATAAAGGTCACGT GAACATGTTGTATCCATGCCAACAGTAAATTCAGTTTGATTTCTAATTGTTATGGAGCAATATATAGTAA CCTTATATTTGAGAATATGTATTATTTTCTTGTTTGTACATAACACGGGTAAGATATTTCTATATCGATG TTAACACCATATTCGAAAACGATTTTGTTTATGATTTAAAAATTATTTATGATTCCAGTAAGAGCTATAG TAATCAGTTCTTACGACGGTTCGTTTTAATTTTGTTATATTTATGTACCAATTATACTTAAATTAAGAGG ATTTATCGGAATAGACATGAGGCTGTATTGCATGCTTAAAGCATGTACTTGTTCGTATTATCCTTCGTAA AATTCGTTAACATGCACAGACTTTAGGGTACAACATTAATATGAAACTTGTTTCGAAATATGTATTTTTT GTAGTCGCTTACAGTCATGATAAGGCCGAGTATAGTGTCACTTTTTGATCAAAAGTTATTCTTGGACAAA TTGAAAGTGACACCTTTGCGTCAAAACCTTTTCGATTTTGGTTGTTTTGTTTTTTCCTTTTTAGTTTCTT TTTTCTTAACTTGGTTATCTTAAGCTATAAATCTATCAATATGTCCGATCTGAGAATCAACGATTCACAA TTTCCTTGTTTACATTTACTGCCGAACTTAATTTCCTGTTGAAATGCGAGATATTTTCCACTGTTTGTGT TTTTGGTTGGTTTATTTAAAAAAAAAATAAGTTATGCGTTTTATGCTTTGCGTTGAAAGTAGTAAATACT GCGTTTTACCTTTTCCTGAAACCTTGTTCGAATCATAAATTAATGGCTAACGGAACATTCGAAATACGAT GATACACAGCTGAGCTTGGAAGGGGTTAGGAACTGGGCAATGAAGTTAGGAACACTCTATTACAAGAAAT AGCCGTTAAATCAATAGTTATTAGATTCAAAATGAAAGCAAAAGAGGTGAAAAGTGATGATTTAATGACA TCGGAAATATCTATTTCTTGTAATTATCACCTTGGCAATGGCCTCTCCTGTGTCATTGTTCAAGGAATTT GGCTTCAGAACACGGCTCAAAAGATTTAATGGCTTCCCAGAGCCACACCCTTAACCATAAAAATCGTATT AGTCTCTAATCCAAACGTTTGTTAAATTTTGTCATAACCTCTATATAGTCCAGAATATTATATACCACGG CGTATTGTATAGTTCTTGCAATAGATTGTGGTCATTCTAACGGTAATATTCTATTTTAACGTGTGAAAAT GGGAAGTTGAGCGATGCGGTTATTGTTTCAGAAATAATTACCCCCTGTTTTCTGCATGTAGGCTAATAGT GGAGCGTTTCTCTCTACCTGCCAAGTGTGACTGTCTGACAATCGGACACACCCTTAATTTCGTCACCGGT CTTCCGTGAAATTGTTGGGTGTCGCTTCAAAGCCCCCCTCCCCCCCCCCCCCCCAAAAAAAAGAGTTAAA CTTAAGCCCCTGATTTGAAATAGGAGTGTGCGGTTATTCTCTCCCTTAAAAACATTATTAAGAGTTATAA TTATTCAAACGACATATTAACATGGTATGATATGTTATTATGTAATAATAGGACGTTCTCCCATCAAATA TGAATTACAACGGACTGGAATAAAAAATAAAGCCCTCTTCGGAGAAAGCAAAATTCGGATAAAGATTAAC TACGTTTTTCATTTTTTTTTCTTCTCAATGGGTGCGGTTATTTAAATTGGGATGACATTTACGAGGAAAA TTGTGTCGTTTCAATGCTGACATTTTAATCACACACTGACAATACGTTTGCCCCACCTTTGTTTTGCTCG CGCGATTTGGACAACATTGCACGTCAATCAGGCAATGCTTAAAATGCGAAAAGTAGGCAACACAGGTTGA GCCTCGAATCCTGTTTATTTTGACAATTCTGAGTCACAGGGTATATGCTTGGAGAATAATCCCGATTGTG GTTTTAGGGCTTCTTAAATACAAATCCGCGAGGGCTGTTTTGGCGTTTCCTCGCAAGTTTGGCATTTGAC GGCCTTCTGCTTCGATCTCGCCTCGTGTTAGGATTACAGCGAACATGGAGAGGAGAGGACGCCAATTAAA GTCCACCGCATACAATGCGACGCTTCTACGATCGATTTTTTAAATAGAAATCGCAGTTGCAATGGCTATG GAAATTTGATCATAATCGTCTTCTTGAATGAGGTTCTGAATAACGAAATAAACATCAGCAATCGAAAAAG AAAACCTAAGCCTTCTAGTCGGCATAAAAGCCAAATCGGCTTCAATTCGTAGACAATCGCACAACTGAAA CGACGTCACTACGATTCGGAGCCGATATTAATTTTTACTCCATCAAGGAAACTTGCAGTCTGCTGACATT TTTATTCTATTATTTATATTTATGTATTTTTAACTAAGTTAATACAGGTTTAAATGTTCCGAGTCAATTG CTATTGCGAGTCCTTCCAAAATCGGGTCGTAGTCAGATCGTATAGTTTGTGGTGTCGCTTTAAATACCTG GAGCATGATTCCACACAAGTAATGTTACTATGAGCAAAATAACGATTCGCAAAATTATAGTTAACAAGAT TTCAATGGTTGATAAGAAAAAAATAGAATCGGACAAAAATACGCGACAAAATCGATACTGACGTAACAAT CAGGCAACATTTTATCCGCCATTTTGACGACTTGAAATCAAAACTGAATATATTACAAAAACTTACGATA ATTATTGAACACCTTCTTTTTGAAGAGTACTTAAGTATTATGTTTTTTGTTTTAATCATGAGCATGATGG TGAATATATTTATTTTTTATGAAACGGGTAAGAAGATGTTTTAAATTGGACACAACGTTGCCAAATTGGA AATGTAGAGCGATGTAGAGGTGATGTAAATCGATGAATCATTCGGGTTTCATGGACAAAGTATTGATATA ATCACTCTCTTACATTGTTGGGCATTATGGTTAGTTATTGTTTCATAGTGCCTTTGTATTTGCCCAGATG CTATAGACTGACAAATTATATTCTGAATCAGAATTGAGACGTGCTTTCCTGGGTGATACTACTTCAAGCA ATTTAATGAGCATGTTTTGCTCGTTTCACGGAATTCCTATTCGACCAATACCCCAAGTCATCACCAACTT ATTCTCTAAATTGATTAACGATCAGCATCGTTTCCTGTTTAAATTATTAAAGATGATTGGGTACTTAGCA AAGCAATCGTTGTGTTGTTCCTTTTGCATTTCCACTCTAGGTGCATGCAAAGGATTTCAAATCCAGACTC GCAGGAGTGGTACCAGTGATTTTTTTTTGGTTATAGTTCAAACAACTCCAAAATTGAGGTTTGAAATTAC TAATCTGAGAGTGAATTCGGCTGTTTTGAGGTGAATTTGCACTCCAGAATTAAGAGACTACGAGTCCATA CCTAAAAGAGTGAATTCATAGTCGAGTGGATTCCACTCCTGTCCATGTCCAGAGAAGTTCTGGCTTAAAC TCTACGGCTGGAATATCAGCCATGCATGTTGACATTTCAGTATTGTCATTTAAAAGTTATCCCGTTGAAC CGAACTACAAAATGATTACGTCCTAATTCGGACTTTGTTTTAAATTCCTACCGAGTCATTTATCCTTTGT CTGAGTTCGCCGCCTAGCGCCATTCCGTTCATGCCGTCAGAGTTGCCTATCTTTCATACTTCGCCCCTTA TTAAGCCGATGTGTATTCTCTCTTTGATTTGAATCTCTTCTATGATGCCATATCATGTCCGGACTTTTCA TTAGGATCATTTTCCATTCCTCAATTTTCTTTCATCCTCATCTTTTCTTTCTCCCTCACATATCATCTCT AATTTGGCTGGTAGCGGTGCGGTGTATACGCCGTGGCGCCGGCCGCATTTGCATCTCAAACGGACGCCGA TGAAGAAAAATAATTTCTTTATCTTCGGATAATGAGTTTTTGATTCTTTGTGATTTCGGTTTCATTTTCT TTTCCAATGAAGGAAGAGTCTTATTACGAAAGGATAAATGATTTTTGTTCTCTCTCTCTCTCTCTCTCTC TCTCTATCTACCCTTTCCCCTTGATGCGCATGGATTTTGCTCATAGATTTTGCTCATAACGAGGACATTC AACAGTTAATGTTCGAATGGAAAAACTNTTTGCTTCTCTNNTCAGGTTCTCTGAGATGGACCTGTTGTTT GTTTTACCGTTTAACTTATTATACTCTCTCTATATGTGAATTCAACATTCAATCATTCTGTTTTCTAAAA TATCTACACACGGCGGAAATTATGGTAACATTGTATTCTGACACGTTTTCACAATGTATTCTGATCATAT GCGATCGTTTTCAAGTGTATTTTATTATGTAGAGAGTTGTACTTGATTCCACATATCGTAATAGAATACT TGACTCATAGTGACACGTTTTTCAGGCTTTGAATTAGATGGTAATTTAAGTTGATAATAACGAGAATATA TATTTCAACCTGCATAGATAAAGATTTGTAAAACATATTTAAGATTTTAAAATTTTGAATAAATCATGTA AACAACAATTTTACAGAGTTTTGAAAAGTGTATTTTTATATAATATTTTAGCAAAAACAAATCATGTACT GAAATCGTATAGAAAATTTGATAAAGCTTGCTGCTTTTCGATGACTAAAGAATGGAGCTACAGCGTTTTG TTTTCATAAGTTAGTTAATAATATTTCTGAACAGTTTCGTTGAAACAATCGTTTTTCTTTCGTTGTTTTT CATTCATGATATTTGATTACTTTTCTCTGTTATGACTTGAATGTAATTTAGTTAAATTTACTGATAAGCT GTACCGTTCTCAGTATTTTGATTAGAAATTTCTTGTTATGACAATGATGCATGATTATACCGCATAACCT ACATTAATGACTTTAAACCAATTAGGCAGCTATTACATTCGATTGTCTGCCAAAAGGTCGTAACACATCT AAAATAAGACCATTCGTAAATGCGACCTTTTGGCGGGCAATTTATTGCTTGATTACAATATCTGTTCCAA TCGTATATTCGGATACGTAATCAAGGCATGCTTGATTATGACTAGATGATTTATCTTGCAATCAAGAATA ATGTTTCTTCTTCATTATTTTTGTTCCTGATCGATGATTATTAATTAGTTCTTATCTTGATCATGGTTAT CAATCATTTTTACTATAATGATGATTTTGTCTGTGGTAAATTGGTTTATTTAGTGTTTTACCTCGATTTA ATATCACTTTTATGTTGTGCTTTTTATCTTGTCTATTATTATTTATGAAAGGGCCATTGTGGTACCGACC TTTGTACATATCTGTACATGCCTTTATACAAGAGAATTAAATTTGTATATTACCGTACACGAG
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
