Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT105202.1 TSA: Strongylocentrotus purpuratus WHL22.342226.0 mRNA sequence CTCCCCCACACACCGTACGATATACTACTCAATGAACTACGAGTTACTCATGCGCGCGCTCTAGCAACTC TCCGCAGTTCGATTTATCAACAAATTTTTCAGAAGCAGTAAAATTACCTTTCGAAGAGGTGCGCTGAAAT TTTACTCTCTCCAGTTCAAAGGTTGGTGAAAGTTTAGAAGCCTGCAACCTTGCTACTTCGTTCTCGGAGG ACTTACTGCATTTAATAGAGTCATCCATGAAAAATTGGTCTACATCACTCAATCGGACTAGAAACGCTTT TGCTTTGAAGAGAATTGTTTAACGGGACCATACCTCGGCTCAACTTGTCGACAAGAAGGCGACTGCATTG CTTCGCCGGAGCAACTGGGTATTTGTAGTTCCAAGTACCGGCGGCGGTCTCCTTTGAACTTGGGGGCTTT TACGAATTTCTGCAACTACCAACGATTTTAGAAGGAAGGAATTTAGGATTTAGACGCTCAGAATGGCGGC TCCTTCTGCAATTTTAAAATACCTGTTGTCAGTACTTGTGTGTTATGTGCTTTTCGCCGTTCCAAGTCAG GGAATATACATCAAAGACAGGAGCAGCAGGCAGAGGGGGAGCGAGAGGACAAGGGGGAGGGACAACCCAG GCGATGATACCTCGGTGGAGGAAAGGAGGAGAGAACCGTTCACAAGAACACTGGTGCTATGTGAGGCAGA CAGGGAGTGCCCGTACAAGTACTACTGCCACAGCGGCGAGGGCCACAAGTCATGTCTCAGGTGCAGAAAG TCGCATCGTCGTTGCCATAGAAACAAGATGTGTTGCCAGGGAAACACGTGTGTCGATGGTCGCTGCATCC CCCATCAGTTCCGATTCGACGAGGCCTACAACACCGCCGTGCAAAACTTCGAGTCGGAAGTGAACGAGGA GGAGGAGAGTATCCTTCAGGACACCAAGTTTAAACTAAGAAAAGCTCGCCAGGGTGAGCAGTGTTCTTCA TCTGTATCGTGCGAGGACGGTTTGTGCTGCGCTCAACATCTCTGGTCCAAAATGTGTAAGCCGATGCTGG AAGAGGGGGACATCTGCACCAAGAAACGCGATCGTCTCACGGATGTCTTCCAGCGATGCGAGTGTTCGCA AGGTCTCTCCTGCAAGCGCGATTCTGTTCCCGAACGCCGCCTCCACGTCTGCCAAGCCGTCAAGCACCGA TCGAGTGGCACCAGCACGGAACGAGGTGGCGGAGAGGGCGCTGCACAGGGTGAAACCTTGTCACAGCGCG AGAGATTACTGTCGCTTCCGGTCGAAAAGATTCGACCGCTTCCGAGCAAGAACGACGGCGACCTCCTTGG CTACCTCTCGGCGGAATCAGGCGAGAAGCTCTTCGACCTCGCCGGCAGAGGCGAGCGGTGGATGATGGGG CGGTCGGCGGAGAAATTGAAAGGCACGGCGTACAGGGACACAACCGAAATTACGCGAACGGAACAAGCCG ATATTGAGGCCAGCCAGTTAACTGTATTATGATCACCATGATCCTTCTGATGACTTGATGAGGTAGCAAG ATGGTGAGATGCGAATGGTATGATGAGCATCTTGCGCAAAATGATGAGAGGATAATCCGAATATGATGAG GAAGACAATCATAGGACGGGCGCCAGACCTTTGACGGGGAGTCGGAACAGTCAGACATCGCTAATTGGAA AAGTAAACCCAACTCCTTGATGAAGCCGTTTCACTGCCGAACTCTCCCTGTCTGTCGCCGCTCTTTAAAA TCTCCTCAAGCAGTGTCGCCATTCGAAAAATCTCGCTCGATTGTTCCACTTTATGAAAAATAGATAAAAA TATGATTGGTGCGGTATGGAGAAAGCAAACGAGTTATAGAGAGTCGCTTGTCGGTCATGATGAGCTGAGT TATGGTATCTGTTTAACTAAATCGATAATACAGAGGGTCATATTGCGATGTCATTTAACTGCAGGTCTTC CAGTGCGACCATGCAAAATGCAGAGATGAGAAAATCTAAGTAAGAAGTAACTTTCTCTAATGATTAGGGG GTAAGATTCTGGCTTTATTAGTCACAGTTTTGTATTTAATATAGCATTTCATGATAACCAACAAAACACT TAATTATATAAAAGGATATTTTCACAACTATTGTACTTAATTTATTAATCATGGTATTAATTTATGAGAC ACGTAACGTTAGTATGTTTATGTTTTAATTTGCATCAATCTTAATCAGGGCATCTAGCCTCGAAAATTGC ACTGGCAAAAATGATAATAAGTGTATACAAAATCGATGTTAAATTCTAAAGAAATTGAAATCTGTATTCA GATATGAATATATCACTGACGTTTAAGGCAGTGCACATGTAAAACTTATCATTGTATTCATGTGGCGTGG ATGACCAGTGTGTGACGTAACAACATCAATCATGTGATATCTCTCTATTGATTTAAGTATATAACCCAAC TCTCAATCACGTTATGTCATGTGATACTGGTCACGTGAACATGTTGTATGTCATGTGATAAAGGTCACGT GAACATGTTGTATCCATGCCAACAGTAAATTCAGTTTGATTTCTAATTGTTATGGAGCAATATATAGTAA CCTTATATTTGAGAATATGTATTATTTTCTTGTTTGTACATAACACGGGTAAGATATTTCTATATCGATG TTAACACCATATTCGAAAACGATTTTGTTTATGATTTAAAAATTATTTATGATTCCAGTAAGAGCTATAG TAATCAGTTCTTACGACGGTTCGTTTTAATTTTGTTATATTTATGTACCAATTATACTTAAATTAAGAGG ATTTATCGGAATAGACATGAGGCTGTATTGCATGCTTAAAGCATGTACTTGTTCGTATTATCCTTCGTAA AATTCGTTAACATGCACAGACTTTAGGGTACAACATTAATATGAAACTTGTTTCGAAATATGTATTTTTT GTAGTCGCTTACAGTCATGATAAGGCCGAGTATAGTGTCACTTTTTGATCAAAAGTTATTCTTGGACAAA TTGAAAGTGACACCTTTGCGTCAAAACCTTTTCGATTTTGGTTGTTTTGTTTTTTCCTTTTTAGTTTCTT TTTTCTTAACTTGGTTATCTTAAGCTATAAATCTATCAATATGTCCGATCTGAGAATCAACGATTCACAA TTTCCTTGTTTACATTTACTGCCGAACTTAATTTCCTGTTGAAATGCGAGATATTTTCCACTGTTTGTGT TTTTGGTTGGTTTATTTAAAAAAAAAATAAGTTATGCGTTTTATGCTTTGCGTTGAAAGTAGTAAATACT GCGTTTTACCTTTTCCTGAAACCTTGTTCGAATCATAAATTAATGGCTAACGGAACATTCGAAATACGAT GATACACAGCTGAGCTTGGAAGGGGTTAGGAACTGGGCAATGAAGTTAGGAACACTCTATTACAAGAAAT AGCCGTTAAATCAATAGTTATTAGATTCAAAATGAAAGCAAAAGAGGTGAAAAGTGATGATTTAATGACA TCGGAAATATCTATTTCTTGTAATTATCACCTTGGCAATGGCCTCTCCTGTGTCATTGTTCAAGGAATTT GGCTTCAGAACACGGCTCAAAAGATTTAATGGCTTCCCAGAGCCACACCCTTAACCATAAAAATCGTATT AGTCTCTAATCCAAACGTTTGTTAAATTTTGTCATAACCTCTATATAGTCCAGAATATTATATACCACGG CGTATTGTATAGTTCTTGCAATAGATTGTGGTCATTCTAACGGTAATATTCTATTTTAACGTGTGAAAAT GGGAAGTTGAGCGATGCGGTTATTGTTTCAGAAATAATTACCCCCTGTTTTCTGCATGTAGGCTAATAGT GGAGCGTTTCTCTCTACCTGCCAAGTGTGACTGTCTGACAATCGGACACACCCTTAATTTCGTCACCGGT CTTCCGTGAAATTGTTGGGTGTCGCTTCAAAGCCCCCCTCCCCCCCCCCCCCCCAAAAAAAAGAGTTAAA CTTAAGCCCCTGATTTGAAATAGGAGTGTGCGGTTATTCTCTCCCTTAAAAACATTATTAAGAGTTATAA TTATTCAAACGACATATTAACATGGTATGATATGTTATTATGTAATAATAGGACGTTCTCCCATCAAATA TGAATTACAACGGACTGGAATAAAAAATAAAGCCCTCTTCGGAGAAAGCAAAATTCGGATAAAGATTAAC TACGTTTTTCATTTTTTTTTCTTCTCAATGGGTGCGGTTATTTAAATTGGGATGACATTTACGAGGAAAA TTGTGTCGTTTCAATGCTGACATTTTAATCACACACTGACAATACGTTTGCCCCACCTTTGTTTTGCTCG CGCGATTTGGACAACATTGCACGTCAATCAGGCAATGCTTAAAATGCGAAAAGTAGGCAACACAGGTTGA GCCTCGAATCCTGTTTATTTTGACAATTCTGAGTCACAGGGTATATGCTTGGAGAATAATCCCGATTGTG GTTTTAGGGCTTCTTAAATACAAATCCGCGAGGGCTGTTTTGGCGTTTCCTCGCAAGTTTGGCATTTGAC GGCCTTCTGCTTCGATCTCGCCTCGTGTTAGGATTACAGCGAACATGGAGAGGAGAGGACGCCAATTAAA GTCCACCGCATACAATGCGACGCTTCTACGATCGATTTTTTAAATAGAAATCGCAGTTGCAATGGCTATG GAAATTTGATCATAATCGTCTTCTTGAATGAGGTTCTGAATAACGAAATAAACATCAGCAATCGAAAAAG AAAACCTAAGCCTTCTAGTCGGCATAAAAGCCAAATCGGCTTCAATTCGTAGACAATCGCACAACTGAAA CGACGTCACTACGATTCGGAGCCGATATTAATTTTTACTCCATCAAGGAAACTTGCAGTCTGCTGACATT TTTATTCTATTATTTATATTTATGTATTTTTAACTAAGTTAATACAGGTTTAAATGTTCCGAGTCAATTG CTATTGCGAGTCCTTCCAAAATCGGGTCGTAGTCAGATCGTATAGTTTGTGGTGTCGCTTTAAATACCTG GAGCATGATTCCACACAAGTAATGTTACTATGAGCAAAATAACGATTCGCAAAATTATAGTTAACAAGAT TTCAATGGTTGATAAGAAAAAAATAGAATCGGACAAAAATACGCGACAAAATCGATACTGACGTAACAAT CAGGCAACATTTTATCCGCCATTTTGACGACTTGAAATCAAAACTGAATATATTACAAAAACTTACGATA ATTATTGAACACCTTCTTTTTGAAGAGTACTTAAGTATTATGTTTTTTGTTTTAATCATGAGCATGATGG TGAATATATTTATTTTTTATGAAACGGGTAAGAAGATGTTTTAAATTGGACACAACGTTGCCAAATTGGA AATGTAGAGCGATGTAGAGGTGATGTAAATCGATGAATCATTCGGGTTTCATGGACAAAGTATTGATATA ATCACTCTCTTACATTGTTGGGCATTATGGTTAGTTATTGTTTCATAGTGCCTTTGTATTTGCCCAGATG CTATAGACTGACAAATTATATTCTGAATCAGAATTGAGACGTGCTTTCCTGGGTGATACTACTTCAAGCA ATTTAATGAGCATGTTTTGCTCGTTTCACGGAATTCCTATTCGACCAATACCCCAAGTCATCACCAACTT ATTCTCTAAATTGATTAACGATCAGCATCGTTTCCTGTTTAAATTATTAAAGATGATTGGGTACTTAGCA AAGCAATCGTTGTGTTGTTCCTTTTGCATTTCCACTCTAGGTGCATGCAAAGGATTTCAAATCCAGACTC GCAGGAGTGGTACCAGTGATTTTTTTTTGGTTATAGTTCAAACAACTCCAAAATTGAGGTTTGAAATTAC TAATCTGAGAGTGAATTCGGCTGTTTTGAGGTGAATTTGCACTCCAGAATTAAGAGACTACGAGTCCATA CCTAAAAGAGTGAATTCATAGTCGAGTGGATTCCACTCCTGTCCATGTCCAGAGAAGTTCTGGCTTAAAC TCTACGGCTGGAATATCAGCCATGCATGTTGACATTTCAGTATTGTCATTTAAAAGTTATCCCGTTGAAC CGAACTACAAAATGATTACGTCCTAATTCGGACTTTGTTTTAAATTCCTACCGAGTCATTTATCCTTTGT CTGAGTTCGCCGCCTAGCGCCATTCCGTTCATGCCGTCAGAGTTGCCTATCTTTCATACTTCGCCCCTTA TTAAGCCGATGTGTATTCTCTCTTTGATTTGAATCTCTTCTATGATGCCATATCATGTCCGGACTTTTCA TTAGGATCATTTTCCATTCCTCAATTTTCTTTCATCCTCATCTTTTCTTTCTCCCTCACATATCATCTCT AATTTGGCTGGTAGCGGTGCGGTGTATACGCCGTGGCGCCGGCCGCATTTGCATCTCAAACGGACGCCGA TGAAGAAAAATAATTTCTTTATCTTCGGATAATGAGTTTTTGATTCTTTGTGATTTCGGTTTCATTTTCT TTTCCAATGAAGGAAGAGTCTTATTACGAAAGGATAAATGATTTTTGTTCTCTCTCTCTCTCTCTCTCTC TCTCTATCTACCCTTTCCCCTTGATGCGCATGGATTTTGCTCATAGATTTTGCTCATAACGAGGACATTC AACAGTTAATGTTCGAATGGAAAAACTNTTTGCTTCTCTNNTCAGGTTCTCTGAGATGGACCTGTTGTTT GTTTTACCGTTTAACTTATTATACTCTCTCTATATGTGAATTCAACATTCAATCATTCTGTTTTCTAAAA TATCTACACACGGCGGAAATTATGGTAACATTGTATTCTGACACGTTTTCACAATGTATTCTGATCATAT GCGATCGTTTTCAAGTGTATTTTATTATGTAGAGAGTTGTACTTGATTCCACATATCGTAATAGAATACT TGACTCATAGTGACACGTTTTTCAGGCTTTGAATTAGATGGTAATTTAAGTTGATAATAACGAGAATATA TATTTCAACCTGCATAGATAAAGATTTGTAAAACATATTTAAGATTTTAAAATTTTGAATAAATCATGTA AACAACAATTTTACAGAGTTTTGAAAAGTGTATTTTTATATAATATTTTAGCAAAAACAAATCATGTACT GAAATCGTATAGAAAATTTGATAAAGCTTGCTGCTTTTCGATGACTAAAGAATGGAGCTACAGCGTTTTG TTTTCATAAGTTAGTTAATAATATTTCTGAACAGTTTCGTTGAAACAATCGTTTTTCTTTCGTTGTTTTT CATTCATGATATTTGATTACTTTTCTCTGTTATGACTTGAATGTAATTTAGTTAAATTTACTGATAAGCT GTACCGTTCTCAGTATTTTGATTAGAAATTTCTTGTTATGACAATGATGCATGATTATACCGCATAACCT ACATTAATGACTTTAAACCAATTAGGCAGCTATTACATTCGATTGTCTGCCAAAAGGTCGTAACACATCT AAAATAAGACCATTCGTAAATGCGACCTTTTGGCGGGCAATTTATTGCTTGATTACAATATCTGTTCCAA TCGTATATTCGGATACGTAATCAAGGCATGCTTGATTATGACTAGATGATTTATCTTGCAATCAAGAATA ATGTTTCTTCTTCATTATTTTTGTTCCTGATCGATGATTATTAATTAGTTCTTATCTTGATCATGGTTAT CAATCATTTTTACTATAATGATGATTTTGTCTGTGGTAAATTGGTTTATTTAGTGTTTTACCTCGATTTA ATATCACTTTTATGTTGTGCTTTTTATCTTGTCTATTATTATTTATGAAAGGGCCATTGTGGTACCGACC TTTGTACATATCTGTACATGCCTTTATACAAGAGAATTAAATTTGTATATTACCGTACACGAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds