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Profile Publications(43)

Publications By Takashi Yamamoto

Results 1 - 43 of 43 results

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Partial exogastrulation due to apical-basal polarity of F-actin distribution disruption in sea urchin embryo by omeprazole., Watanabe K, Yasui Y, Kurose Y, Fujii M, Yamamoto T, Sakamoto N, Awazu A., Genes Cells. June 1, 2022; 27 (6): 392-408.          

TrBase: A genome and transcriptome database of Temnopleurus reevesii., Kinjo S, Kiyomoto M, Suzuki H, Yamamoto T, Ikeo K, Yaguchi S., Dev Growth Differ. May 1, 2022; 64 (4): 210-218.

CRISPR-Cas9 editing of non-coding genomic loci as a means of controlling gene expression in the sea urchin., Pieplow A, Dastaw M, Sakuma T, Sakamoto N, Yamamoto T, Yajima M, Oulhen N, Wessel GM., Dev Biol. April 1, 2021; 472 85-97.

Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase., Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S., Methods Mol Biol. January 1, 2021; 2219 267-275.

Invertebrate Gonadotropin-Releasing Hormone Receptor Signaling and Its Relevant Biological Actions., Sakai T, Yamamoto T, Matsubara S, Kawada T, Satake H., Int J Mol Sci. November 12, 2020; 21 (22):       

Establishment of homozygous knock-out sea urchins., Yaguchi S, Yaguchi J, Suzuki H, Kinjo S, Kiyomoto M, Ikeo K, Yamamoto T., Curr Biol. May 18, 2020; 30 (10): R427-R429.

Recycling endosomes associate with Golgi stacks in sea urchin embryos., Fujii S, Tago T, Sakamoto N, Yamamoto T, Satoh T, Satoh AK., Commun Integr Biol. April 30, 2020; 13 (1): 59-62.  

Establishment of knockout adult sea urchins by using a CRISPR-Cas9 system., Liu D, Awazu A, Sakuma T, Yamamoto T, Sakamoto N., Dev Growth Differ. August 1, 2019; 61 (6): 378-388.

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus., Kinjo S, Kiyomoto M, Yamamoto T, Ikeo K, Yaguchi S., Dev Growth Differ. April 1, 2018; 60 (3): 174-182.

FRET-based tension measurement across actin-associated mechanotransductive structures using Lima1., Hirano S, Yamamoto T, Michiue T., Int J Dev Biol. January 1, 2018; 62 (9-10): 631-636.

Action of Protein Tyrosine Kinase Inhibitors on the Hypotonicity-Stimulated Trafficking Kinetics of Epithelial Na+ Channels (ENaC) in Renal Epithelial Cells: Analysis Using a Mathematical Model., Marunaka R, Taruno A, Yamamoto T, Kanamura N, Marunaka Y., Cell Physiol Biochem. January 1, 2018; 50 (1): 363-377.

Dynamic changes in the interchromosomal interaction of early histone gene loci during development of sea urchin., Matsushita M, Ochiai H, Suzuki KT, Hayashi S, Yamamoto T, Awazu A, Sakamoto N., J Cell Sci. December 15, 2017; 130 (24): 4097-4107.

Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.                          

Cilia play a role in breaking left-right symmetry of the sea urchin embryo., Takemoto A, Miyamoto T, Simono F, Kurogi N, Shirae-Kurabayashi M, Awazu A, Suzuki KT, Yamamoto T, Sakamoto N., Genes Cells. June 1, 2016; 21 (6): 568-78.

Targeted mutagenesis in sea urchin embryos using TALENs., Hosoi S, Sakuma T, Sakamoto N, Yamamoto T., Dev Growth Differ. January 1, 2014; 56 (1): 92-7.

The 3''UTR of nanos2 directs enrichment in the germ cell lineage of the sea urchin., Oulhen N, Yoshida T, Yajima M, Song JL, Sakuma T, Sakamoto N, Yamamoto T, Wessel GM., Dev Biol. May 1, 2013; 377 (1): 275-83.

Zinc-finger nuclease-mediated targeted insertion of reporter genes for quantitative imaging of gene expression in sea urchin embryos., Ochiai H, Sakamoto N, Fujita K, Nishikawa M, Suzuki K, Matsuura S, Miyamoto T, Sakuma T, Shibata T, Yamamoto T., Proc Natl Acad Sci U S A. July 3, 2012; 109 (27): 10915-20.

Nucleosome exclusion from the interspecies-conserved central AT-rich region of the Ars insulator., Takagi H, Inai Y, Watanabe S, Tatemoto S, Yajima M, Akasaka K, Yamamoto T, Sakamoto N., J Biochem. January 1, 2012; 151 (1): 75-87.

Greatwall kinase and cyclin B-Cdk1 are both critical constituents of M-phase-promoting factor., Hara M, Abe Y, Tanaka T, Yamamoto T, Okumura E, Kishimoto T., Nat Commun. January 1, 2012; 3 1059.              

HpSumf1 is involved in the activation of sulfatases responsible for regulation of skeletogenesis during sea urchin development., Sakuma T, Ohnishi K, Fujita K, Ochiai H, Sakamoto N, Yamamoto T., Dev Genes Evol. August 1, 2011; 221 (3): 157-66.

Targeted mutagenesis in the sea urchin embryo using zinc-finger nucleases., Ochiai H, Fujita K, Suzuki K, Nishikawa M, Shibata T, Sakamoto N, Yamamoto T., Genes Cells. August 1, 2010; 15 (8): 875-85.

Implication of HpEts in gene regulatory networks responsible for specification of sea urchin skeletogenic primary mesenchyme cells., Yajima M, Umeda R, Fuchikami T, Kataoka M, Sakamoto N, Yamamoto T, Akasaka K., Zoolog Sci. August 1, 2010; 27 (8): 638-46.

Dicer is required for the normal development of sea urchin, Hemicentrotus pulcherrimus., Okamitsu Y, Yamamoto T, Fujii T, Ochiai H, Sakamoto N., Zoolog Sci. June 1, 2010; 27 (6): 477-86.

HpSulf, a heparan sulfate 6-O-endosulfatase, is involved in the regulation of VEGF signaling during sea urchin development., Fujita K, Takechi E, Sakamoto N, Sumiyoshi N, Izumi S, Miyamoto T, Matsuura S, Tsurugaya T, Akasaka K, Yamamoto T., Mech Dev. April 1, 2010; 127 (3-4): 235-45.

Role of the nanos homolog during sea urchin development., Fujii T, Sakamoto N, Ochiai H, Fujita K, Okamitsu Y, Sumiyoshi N, Minokawa T, Yamamoto T., Dev Dyn. October 1, 2009; 238 (10): 2511-21.

Suppressor of Hairless (Su(H)) is required for foregut development in the sea urchin embryo., Karasawa K, Sakamoto N, Fujita K, Ochiai H, Fujii T, Akasaka K, Yamamoto T., Zoolog Sci. October 1, 2009; 26 (10): 686-90.

The Ars insulator facilitates I-SceI meganuclease-mediated transgenesis in the sea urchin embryo., Ochiai H, Sakamoto N, Suzuki K, Akasaka K, Yamamoto T., Dev Dyn. September 1, 2008; 237 (9): 2475-82.

Analysis of cis-regulatory elements controlling spatio-temporal expression of T-brain gene in sea urchin, Hemicentrotus pulcherrimus., Ochiai H, Sakamoto N, Momiyama A, Akasaka K, Yamamoto T., Mech Dev. January 1, 2008; 125 (1-2): 2-17.

DNA variations within the sea urchin Otx gene enhancer., Yamamoto T, Kawamoto R, Fujii T, Sakamoto N, Shibata T., FEBS Lett. November 13, 2007; 581 (27): 5234-40.

Developmental expression of HpNanos, the Hemicentrotus pulcherrimus homologue of nanos., Fujii T, Mitsunaga-Nakatsubo K, Saito I, Iida H, Sakamoto N, Akasaka K, Yamamoto T., Gene Expr Patterns. June 1, 2006; 6 (5): 572-7.

Unichrom, a novel nuclear matrix protein, binds to the Ars insulator and canonical MARs., Tagashira H, Shimotori T, Sakamoto N, Katahira M, Miyanoiri Y, Yamamoto T, Mitsunaga-Nakatsubo K, Shimada H, Kusunoki S, Akasaka K., Zoolog Sci. January 1, 2006; 23 (1): 9-21.

A new G-stretch-DNA-binding protein, Unichrom, displays cell-cycle-dependent expression in sea urchin embryos., Moritani K, Tagashira H, Shimotori T, Sakamoto N, Tanaka S, Takata K, Mitsunaga-Nakatsubo K, Bojiiwa Y, Yamamoto T, Shimada H, Akasaka K., Dev Growth Differ. August 1, 2004; 46 (4): 335-41.

The Otx binding site is required for the activation of HpOtxL mRNA expression in the sea urchin, Hemicentrotus pulcherrimus., Hayashibara Y, Mitsunaga-Nakatsubo K, Sakamoto N, Shimotori T, Akasaka K, Yamamoto T., Dev Growth Differ. February 1, 2004; 46 (1): 61-7.

Utilization of a particle gun DNA introduction system for the analysis of cis-regulatory elements controlling the spatial expression pattern of the arylsulfatase gene (HpArs) in sea urchin embryos., Kurita M, Kondoh H, Mitsunaga-Nakatsubo K, Shimotori T, Sakamoto N, Yamamoto T, Shimada H, Takata K, Akasaka K., Dev Genes Evol. February 1, 2003; 213 (1): 44-9.

Quantitative changes in yolk protein and other components in the ovary and testis of the sea urchin Pseudocentrotus depressus., Unuma T, Yamamoto T, Akiyama T, Shiraishi M, Ohta H., J Exp Biol. January 1, 2003; 206 (Pt 2): 365-72.

T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo., Fuchikami T, Mitsunaga-Nakatsubo K, Amemiya S, Hosomi T, Watanabe T, Kurokawa D, Kataoka M, Harada Y, Satoh N, Kusunoki S, Takata K, Shimotori T, Yamamoto T, Sakamoto N, Shimada H, Akasaka K., Development. November 1, 2002; 129 (22): 5205-16.

Cloning of dynein intermediate chain cDNA of the newt Cynops pyrrhogaster., Yamamoto T, Matsuda Y, Hikino T, Nakayama Y, AbĂ© S., DNA Res. April 27, 2001; 8 (2): 81-4.

Developmental changes in localization of the main ganglioside during sea urchin embryogenesis., Nezuo M, Shogomori H, Hoshi M, Yamamoto T, Teshima T, Shiba T, Chiba K., Glycobiology. November 1, 2000; 10 (11): 1243-7.

Effect of Steroids on Gonadal Growth and Gametogenesis in the Juvenile Red Sea Urchin Pseudocentrotus depressus., Unuma T, Yamamoto T, Akiyama T., Biol Bull. April 1, 1999; 196 (2): 199-204.

Primary structure of a 120 kDa protein associated with the fucose sulfate glycoconjugate constituting the acrosome reaction-inducing substance of the sea urchin, Hemicentrotus pulcherrimus., Ohbayashi H, Mantoku T, Yamamoto T, Nomura K, Suzuki N., Dev Growth Differ. December 1, 1998; 40 (6): 641-50.

A Protein Identical to the Yolk Protein Is Stored in the Testis in Male Red Sea Urchin, Pseudocentrotus depressus., Unuma T, Suzuki T, Kurokawa T, Yamamoto T, Akiyama T., Biol Bull. February 1, 1998; 194 (1): 92-97.

A triplex DNA structure of the polypyrimidine: polypurine stretch in the 5'' flanking region of the sea urchin arylsulfatase gene., Sakamoto N, Akasaka K, Yamamoto T, Shimada H., Zoolog Sci. February 1, 1996; 13 (1): 105-9.

A long polypyrimidine:polypurine sequence in 5'' flanking region of arylsulfatase gene of sea urchin embryo., Yamamoto T, Akasaka K, Irie S, Shimada H., Int J Dev Biol. June 1, 1994; 38 (2): 337-44.

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