Publications By Yaqing Chang

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Investigating the loss of major yolk proteins during the processing of sea cucumber (Apostichopus japonicus) using an MRM-based targeted proteomics strategy., Jiang B, Zhang H, Wang J, Wang Y, Du X, Chang Y, Xue C., Food Chem. March 15, 2023; 404 (Pt B): 134670.

Whole-genome resequencing reveals genetic differences and the genetic basis of parapodium number in Russian and Chinese Apostichopus japonicus., Guo C, Zhang X, Li Y, Xie J, Gao P, Hao P, Han L, Zhang J, Wang W, Liu P, Ding J, Chang Y., BMC Genomics. January 16, 2023; 24 (1): 25.

TMT-based proteomics analysis of growth advantage of triploid Apostichopus japonicus., Xie J, Sun Y, Li Y, Zhang X, Hao P, Han L, Cao Y, Ding B, Chang Y, Yin D, Ding J., Comp Biochem Physiol Part D Genomics Proteomics. December 5, 2022; 45 101043.

Sexually dimorphic expression of foxl2 in the sea urchin (Mesocentrotus nudus)., Zhang J, Sun ZH, Liu BZ, Su WY, Chang YQ., Gene Expr Patterns. December 1, 2022; 46 119280.

Transcriptomes reveal the involved genes in the sea urchin Mesocentrotus nudus exposed to high flow velocities., Tian R, Shi D, Yin D, Hu F, Ding J, Chang Y, Zhao C., Sci Rep. October 28, 2022; 12 (1): 13493.

Ecological niche models for the assessment of site suitability of sea cucumbers and sea urchins in China., Sun J, Yu Y, Zhao Z, Yin D, Chang Y, Zhao C., Sci Rep. October 28, 2022; 12 (1): 12795.

High fitness areas drive the aggregation of the sea urchin Mesocentrotus nudus., Yu Y, Sun J, Chang Y, Zhao C., PeerJ. October 6, 2022; 10 e12820.

Isolation and characterization of four pathogenic strains of Vibrio spp. from farmed sea urchins, Strongylocentrotus intermedius, in China., Zhao T, Liu L, Li C, Zou Y, Yan H, Zhan Y, Chang Y., Microb Pathog. August 1, 2022; 169 105651.

MiR-7 Regulates Pathogen-Induced Immune Response via PAK1 in the Sea Cucumber Apostichopus japonicus., Zhao T, Ren L, Li C, Liu L, Zou Y, Yan H, Zhan Y, Chang Y., Front Immunol. July 14, 2022; 13 927796.

Biosynthesis of saponin defensive compounds in sea cucumbers., Thimmappa R, Wang S, Zheng M, Misra RC, Huang AC, Saalbach G, Chang Y, Zhou Z, Hinman V, Bao Z, Osbourn A., Nat Chem Biol. July 1, 2022; 18 (7): 774-781.

Development of a high-throughput SNP array for sea cucumber (Apostichopus japonicus) and its application in genomic selection with MCP regularized deep neural networks., Lv J, Wang Y, Ni P, Lin P, Hou H, Ding J, Chang Y, Hu J, Wang S, Bao Z., Genomics. July 1, 2022; 114 (4): 110426.

Fitness costs of alarm cues in sea urchins: Fertilization, hatching, and larval size., Chi X, Li X, Yang M, Luo J, Zhang T, Huang X, Chang Y, Zhao C., Mar Environ Res. June 1, 2022; 178 105646.

Identification and functional analysis of foxl2 and nodal in sea cucumber, Apostichopus japonicus., Sun JJ, Sun ZH, Wei JL, Ding J, Song J, Chang YQ., Gene Expr Patterns. June 1, 2022; 44 119245.

Expression Regulation Mechanisms of Sea Urchin (Strongylocentrotus intermedius) Under the High Temperature: New Evidence for the miRNA-mRNA Interaction Involvement., Han L, Quan Z, Wu Y, Hao P, Wang W, Li Y, Zhang X, Liu P, Gao C, Wang H, Wang L, Zhang W, Yin D, Chang Y, Ding J., Front Genet. May 13, 2022; 13 876308.

Responses of sea urchins (Strongylocentrotus intermedius) with different sexes to CO2-induced seawater acidification: Histology, physiology, and metabolomics., Cui D, Liu L, Zhao T, Zhan Y, Song J, Zhang W, Yin D, Chang Y., Mar Pollut Bull. May 1, 2022; 178 113606.

Identification of a novel RhoA gene in the sea cucumber Apostichopus japonicus and its immune regulatory function via interacting with miR-2012-5p., Liu L, Zhao T, Lin K, Zou Y, Yan H, Zhan Y, Song J, Chang Y., Int J Biol Macromol. April 1, 2022; 203 572-582.

Digestive Enzyme Activities and Gut Emptying Are Correlated with the Reciprocal Regulation of TRPA1 Ion Channel and Serotonin in the Gut of the Sea Urchin Strongylocentrotus intermedius., Ding J, Wang H, Li Z, Sun J, Ding P, Chi X, Yang M, Chang Y, Zhao C., Biology (Basel). March 24, 2022; 11 (4):

Macroalgae and interspecific alarm cues regulate behavioral interactions between sea urchins and sea cucumbers., Sun J, Yu Y, Zhao Z, Tian R, Li X, Chang Y, Zhao C., Sci Rep. March 10, 2022; 12 (1): 3971.

Transcriptomic and Metabolomic Analyses Provide Insights into the Growth and Development Advantages of Triploid Apostichopus japonicus., Xie J, Sun Y, Cao Y, Han L, Li Y, Ding B, Gao C, Hao P, Jin X, Chang Y, Song J, Yin D, Ding J., Mar Biotechnol (NY). March 1, 2022; 24 (1): 151-162.

Gene expression patterns of sea urchins (Strongylocentrotus intermedius) exposed to different combinations of temperature and hypoxia., Hao P, Ding B, Han L, Xie J, Wu Y, Jin X, Zhang X, Wang W, Wang L, Zhang W, Chang Y, Ding J., Comp Biochem Physiol Part D Genomics Proteomics. March 1, 2022; 41 100953.

Characterization of a sulfated fucan-specific carbohydrate-binding module: A promising tool for investigating sulfated fucans., Mei X, Chang Y, Shen J, Zhang Y, Chen G, Liu Y, Xue C., Carbohydr Polym. February 1, 2022; 277 118748.

Testis-specific expression pattern of dmrt1 and its putative regulatory region in the sea urchin (Mesocentrotus nudus)., Cui Z, Zhang J, Sun Z, Liu B, Han Y, Zhao C, Chang Y., Comp Biochem Physiol B Biochem Mol Biol. January 1, 2022; 257 110668.

Comparative lipidomics profiling of the sea urchin, Strongylocentrotus intermedius., Wang H, Zhao W, Ding B, Zhang Y, Huang X, Liu X, Zuo R, Chang Y, Ding J., Comp Biochem Physiol Part D Genomics Proteomics. December 1, 2021; 40 100900.

Utilizing heterologously overexpressed endo-1,3-fucanase to investigate the structure of sulfated fucan from sea cucumber (Holothuria hilla)., Chen G, Yu L, Zhang Y, Chang Y, Liu Y, Shen J, Xue C., Carbohydr Polym. November 15, 2021; 272 118480.

Application of SNP in Genetic Sex Identification and Effect of Estradiol on Gene Expression of Sex-Related Genes in Strongylocentrotus intermedius., Han YL, Sun ZH, Chang S, Wen B, Song J, Zuo RT, Chang YQ., Front Endocrinol (Lausanne). November 11, 2021; 12 756530.

Conspecific alarm cues are a potential effective barrier to regulate foraging behavior of the sea urchin Mesocentrotus nudus., Chi X, Hu F, Qin C, Huang X, Sun J, Cui Z, Ding J, Yang M, Chang Y, Zhao C., Mar Environ Res. October 1, 2021; 171 105476.

Polyculture of Juvenile Dog Conch Laevistrombus canarium Reveals High Potentiality in Integrated Multitrophic Aquaculture (IMTA)., Chang YC, Ma CH, Lee HT, Hsu TH., Biology (Basel). August 22, 2021; 10 (8):

Identification of Sex-Specific Markers Through 2b-RAD Sequencing in the Sea Urchin (Mesocentrotus nudus)., Cui Z, Zhang J, Sun Z, Liu B, Zhao C, Chang Y., Front Genet. August 5, 2021; 12 717538.

Foraging behavior of the sea urchin Mesocentrotus nudus exposed to conspecific alarm cues in various conditions., Chi X, Yang M, Hu F, Huang X, Yu Y, Chang Y, Wang Q, Zhao C., Sci Rep. August 2, 2021; 11 (1): 15654.

Effects of eliminating interactions in multi-layer culture on survival, food utilization and growth of small sea urchins Strongylocentrotus intermedius at high temperatures., Hu F, Chi X, Yang M, Ding P, Yin D, Ding J, Huang X, Luo J, Chang Y, Zhao C., Sci Rep. July 23, 2021; 11 (1): 15116.

Carryover effects of long-term high water temperatures on fitness-related traits of the offspring of the sea urchin Strongylocentrotus intermedius., Chi X, Shi D, Ma Z, Hu F, Sun J, Huang X, Zhang L, Chang Y, Zhao C., Mar Environ Res. July 1, 2021; 169 105371.

Amino Acid Profiling with Chemometric Analysis as a Feasible Tool for the Discrimination of Marine-Derived Peptide Powders., Wang Q, Wang Y, Jiang X, Ma L, Li Z, Chang Y, Wang Y, Xue C., Foods. June 4, 2021; 10 (6):

Interaction among sea urchins in response to food cues., Sun J, Zhao Z, Zhao C, Yu Y, Ding P, Ding J, Yang M, Chi X, Hu F, Chang Y., Sci Rep. May 11, 2021; 11 (1): 9985.

Analysis of the gene transcription patterns and DNA methylation characteristics of triploid sea cucumbers (Apostichopus japonicus)., Han L, Sun Y, Cao Y, Gao P, Quan Z, Chang Y, Ding J., Sci Rep. April 7, 2021; 11 (1): 7564.

Structure-function relationship analysis of fucoidan from sea cucumber (Holothuria tubulosa) on ameliorating metabolic inflammation., Zhu Y, Tian Y, Wang N, Chang Y, Xue C, Wang J., J Food Biochem. January 1, 2021; 45 (1): e13500.

Identification and functional characterization of piwi1 gene in sea cucumber, Apostichopus japonicas., Sun ZH, Wei JL, Cui ZP, Han YL, Zhang J, Song J, Chang YQ., Comp Biochem Physiol B Biochem Mol Biol. January 1, 2021; 252 110536.

Metabolomics analysis of sea cucumber (Apostichopus japonicus) in different geographical origins using UPLC-Q-TOF/MS., Zhao G, Zhao W, Han L, Ding J, Chang Y., Food Chem. December 15, 2020; 333 127453.

Comparative metabolome analysis provides new insights into increased larval mortality under seawater acidification in the sea urchin Strongylocentrotus intermedius., Li Y, Yin W, Zhan Y, Jia Y, Cui D, Zhang W, Chang Y., Sci Total Environ. December 10, 2020; 747 141206.

Investigation of structural proteins in sea cucumber (Apostichopus japonicus) body wall., Wang Y, Tian M, Chang Y, Xue C, Li Z., Sci Rep. October 30, 2020; 10 (1): 18744.

Identification of molecular markers for superior quantitative traits in a novel sea cucumber strain by comparative microRNA-mRNA expression profiling., Chen Y, Li Y, Zhan Y, Hu W, Sun J, Zhang W, Song J, Li D, Chang Y., Comp Biochem Physiol Part D Genomics Proteomics. September 1, 2020; 35 100686.

Distant hybrids of Heliocidaris crassispina (♀) and Strongylocentrotus intermedius (♂): identification and mtDNA heteroplasmy analysis., Zhan Y, Sun J, Li Y, Cui D, Zhang W, Yang L, Chang Y., BMC Evol Biol. August 11, 2020; 20 (1): 101.

Effects of the brown algae Sargassum horneri and Saccharina japonica on survival, growth and resistance of small sea urchins Strongylocentrotus intermedius., Hu F, Yang M, Ding P, Zhang X, Chen Z, Ding J, Chi X, Luo J, Zhao C, Chang Y., Sci Rep. July 27, 2020; 10 (1): 12495.

Chromosomal-Level Genome Assembly of the Sea Urchin Lytechinus variegatus Substantially Improves Functional Genomic Analyses., Davidson PL, Guo H, Wang L, Berrio A, Zhang H, Chang Y, Soborowski AL, McClay DR, Fan G, Wray GA., Genome Biol Evol. July 1, 2020; 12 (7): 1080-1086.

Collagen fibrils of sea cucumber (Apostichopus japonicus) are heterotypic., Tian M, Xue C, Chang Y, Shen J, Zhang Y, Li Z, Wang Y., Food Chem. June 30, 2020; 316 126272.

Transcriptomes shed light on transgenerational and developmental effects of ocean warming on embryos of the sea urchin Strongylocentrotus intermedius., Shi D, Zhao C, Chen Y, Ding J, Zhang L, Chang Y., Sci Rep. May 13, 2020; 10 (1): 7931.

CO2-driven ocean acidification repressed the growth of adult sea urchin Strongylocentrotus intermedius by impairing intestine function., Zhan Y, Cui D, Xing D, Zhang J, Zhang W, Li Y, Li C, Chang Y., Mar Pollut Bull. April 1, 2020; 153 110944.

miR-10 involved in salinity-induced stress responses and targets TBC1D5 in the sea cucumber, Apostichopus japonicas., Tian Y, Shang Y, Guo R, Ding J, Li X, Chang Y., Comp Biochem Physiol B Biochem Mol Biol. April 1, 2020; 242 110406.

Discovery and Characterization of an Endo-1,3-Fucanase From Marine Bacterium Wenyingzhuangia fucanilytica: A Novel Glycoside Hydrolase Family., Shen J, Chang Y, Zhang Y, Mei X, Xue C., Front Microbiol. February 28, 2020; 11 1674.

Fitness benefits and costs of shelters to the sea urchin Glyptocidaris crenularis., Chi X, Sun J, Yu Y, Luo J, Zhao B, Han F, Chang Y, Zhao C., PeerJ. February 12, 2020; 8 e8886.

Integrated metabolomic and transcriptomic analyses identify critical genes in eicosapentaenoic acid biosynthesis and metabolism in the sea urchin Strongylocentrotus intermedius., Wang H, Ding J, Ding S, Chang Y., Sci Rep. February 3, 2020; 10 (1): 1697.

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