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Profile Publications(38)
ECB-PERS-4089

Publications By Yi-Hsien Su

Results 1 - 38 of 38 results

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Machine learning ensures rapid and precise selection of gold sea-urchin-like nanoparticles for desired light-to-plasmon resonance., Pan F, Wu CC, Chen YL, Kung PY, Su YH., Nanoscale. September 29, 2022; 14 (37): 13532-13541.


Zygotic hypoxia-inducible factor alpha regulates spicule elongation in the sea urchin embryo., Chang WL, Su YH., Dev Biol. April 1, 2022; 484 63-74.


Double Perovskite LaFe1-xNixO3 Coated with Sea Urchin-like Gold Nanoparticles Using Electrophoresis as the Photoelectrochemical Electrode to Enhance H2 Production via Surface Plasmon Resonance Effect., Tsai HW, Su YH., Nanomaterials (Basel). February 12, 2022; 12 (4):                       


Dorsal-ventral axis formation in sea urchin embryos., Su YH., Curr Top Dev Biol. January 1, 2022; 146 183-210.


Echinoderm Microtubule Associated Protein Like 1 Is Indispensable for Oocyte Spindle Assembly and Meiotic Progression in Mice., Yin H, Zhang T, Wang H, Hu X, Hou X, Fang X, Yin Y, Li H, Shi L, Su YQ., Front Cell Dev Biol. May 28, 2021; 9 687522.                    


Evidence for BMP-mediated specification of primordial germ cells in an indirect-developing hemichordate., Lin CY, Yu JK, Su YH., Evol Dev. January 1, 2021; 23 (1): 28-45.


BMP controls dorsoventral and neural patterning in indirect-developing hemichordates providing insight into a possible origin of chordates., Su YH, Chen YC, Ting HC, Fan TP, Lin CY, Wang KT, Yu JK., Proc Natl Acad Sci U S A. June 25, 2019; 116 (26): 12925-12932.


Participation of EML6 in the regulation of oocyte meiotic progression in mice., Yin H, Hou X, Zhang T, Shi L, Su YQ., J Biomed Res. April 30, 2019; 34 (1): 44-53.


Methods to label, isolate, and image sea urchin small micromeres, the primordial germ cells (PGCs)., Campanale JP, Hamdoun A, Wessel GM, Su YH, Oulhen N., Methods Cell Biol. January 1, 2019; 150 269-292.


CRISPR/Cas9-mediated genome editing in sea urchins., Lin CY, Oulhen N, Wessel G, Su YH., Methods Cell Biol. January 1, 2019; 151 305-321.


Reiterative use of FGF signaling in mesoderm development during embryogenesis and metamorphosis in the hemichordate Ptychodera flava., Fan TP, Ting HC, Yu JK, Su YH., BMC Evol Biol. August 3, 2018; 18 (1): 120.                


Recent advances in functional perturbation and genome editing techniques in studying sea urchin development., Cui M, Lin CY, Su YH., Brief Funct Genomics. September 1, 2017; 16 (5): 309-318.


Asymmetric distribution of hypoxia-inducible factor α regulates dorsoventral axis establishment in the early sea urchin embryo., Chang WL, Chang YC, Lin KT, Li HR, Pai CY, Chen JH, Su YH., Development. August 15, 2017; 144 (16): 2940-2950.


Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning., Chang YC, Pai CY, Chen YC, Ting HC, Martinez P, Telford MJ, Yu JK, Su YH., Dev Biol. February 1, 2016; 410 (1): 108-18.


Genome editing in sea urchin embryos by using a CRISPR/Cas9 system., Lin CY, Su YH., Dev Biol. January 15, 2016; 409 (2): 420-8.


FGF signaling repertoire of the indirect developing hemichordate Ptychodera flava., Fan TP, Su YH., Mar Genomics. December 1, 2015; 24 Pt 2 167-75.


Hemichordate genomes and deuterostome origins., Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, Sato A, Fujie M, Baughman KW, Levine J, Gonzalez P, Cameron C, Fritzenwanker JH, Pani AM, Goto H, Kanda M, Arakaki N, Yamasaki S, Qu J, Cree A, Ding Y, Dinh HH, Dugan S, Holder M, Jhangiani SN, Kovar CL, Lee SL, Lewis LR, Morton D, Nazareth LV, Okwuonu G, Santibanez J, Chen R, Richards S, Muzny DM, Gillis A, Peshkin L, Wu M, Humphreys T, Su YH, Putnam NH, Schmutz J, Fujiyama A, Yu JK, Tagawa K, Worley KC, Gibbs RA, Kirschner MW, Lowe CJ, Satoh N, Rokhsar DS, Gerhart J., Nature. November 26, 2015; 527 (7579): 459-65.                          


Analysis of Apoptosis in Ultraviolet-Induced Sea Cucumber (Stichopus japonicus) Melting Using Terminal Deoxynucleotidyl-Transferase-Mediated dUTP Nick End-Labeling Assay and Cleaved Caspase-3 Immunohistochemistry., Yang JF, Gao RC, Wu HT, Li PF, Hu XS, Zhou DY, Zhu BW, Su YC., J Agric Food Chem. November 4, 2015; 63 (43): 9601-8.


Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm., Andrikou C, Pai CY, Su YH, Arnone MI., Elife. July 28, 2015; 4                                       


Noble metal-comparable SERS enhancement from semiconducting metal oxides by making oxygen vacancies., Cong S, Yuan Y, Chen Z, Hou J, Yang M, Su Y, Zhang Y, Li L, Li Q, Geng F, Zhao Z., Nat Commun. July 17, 2015; 6 7800.            


Evolution of extreme stomach pH in bilateria inferred from gastric alkalization mechanisms in basal deuterostomes., Stumpp M, Hu MY, Tseng YC, Guh YJ, Chen YC, Yu JK, Su YH, Hwang PP., Sci Rep. June 8, 2015; 5 10421.      


Sequencing and analysis of the transcriptome of the acorn worm Ptychodera flava, an indirect developing hemichordate., Chen SH, Li KL, Lu IH, Wang YB, Tung CH, Ting HC, Lin CY, Lin CY, Su YH, Yu JK., Mar Genomics. June 1, 2014; 15 35-43.


Telling left from right: left-right asymmetric controls in sea urchins., Su YH., Genesis. March 1, 2014; 52 (3): 269-78.


MicroRNAs support the monophyly of enteropneust hemichordates., Peterson KJ, Su YH, Arnone MI, Swalla B, King BL., J Exp Zool B Mol Dev Evol. September 1, 2013; 320 (6): 368-74.


Gene regulatory control in the sea urchin aboral ectoderm: spatial initiation, signaling inputs, and cell fate lockdown., Ben-Tabou de-Leon S, Su YH, Lin KT, Li E, Davidson EH., Dev Biol. February 1, 2013; 374 (1): 245-54.


Opposing nodal and BMP signals regulate left-right asymmetry in the sea urchin larva., Luo YJ, Su YH., PLoS Biol. January 1, 2012; 10 (10): e1001402.            


The dynamic gene expression patterns of transcription factors constituting the sea urchin aboral ectoderm gene regulatory network., Chen JH, Luo YJ, Su YH., Dev Dyn. January 1, 2011; 240 (1): 250-60.


Influence of surface plasmon resonance on the emission intermittency of photoluminescence from gold nano-sea-urchins., Su YH, Tu SL, Tseng SW, Chang YC, Chang SH, Zhang WM., Nanoscale. December 1, 2010; 2 (12): 2639-46.


Purification and characterization of pepsin-solubilized collagen from skin and connective tissue of giant red sea cucumber (Parastichopus californicus)., Liu Z, Oliveira AC, Su YC., J Agric Food Chem. January 27, 2010; 58 (2): 1270-4.


A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo., Su YH, Li E, Geiss GK, Longabaugh WJ, Krämer A, Davidson EH., Dev Biol. May 15, 2009; 329 (2): 410-21.


Gene regulatory networks for ectoderm specification in sea urchin embryos., Su YH., Biochim Biophys Acta. April 1, 2009; 1789 (4): 261-7.


Molecular characterization of a novel intracellular ADP-ribosyl cyclase., Churamani D, Boulware MJ, Geach TJ, Martin AC, Moy GW, Su YH, Vacquier VD, Marchant JS, Dale L, Patel S., PLoS One. August 29, 2007; 2 (8): e797.                  


Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network., Nam J, Su YH, Lee PY, Robertson AJ, Coffman JA, Davidson EH., Dev Biol. June 15, 2007; 306 (2): 860-9.


A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation., Roux MM, Townley IK, Raisch M, Reade A, Bradham C, Humphreys G, Gunaratne HJ, Killian CE, Moy G, Su YH, Ettensohn CA, Wilt F, Vacquier VD, Burke RD, Wessel G, Foltz KR., Dev Biol. December 1, 2006; 300 (1): 416-33.


The genome of the sea urchin Strongylocentrotus purpuratus., null null, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.


Cyclic GMP-specific phosphodiesterase-5 regulates motility of sea urchin spermatozoa., Su YH, Vacquier VD., Mol Biol Cell. January 1, 2006; 17 (1): 114-21.


Tandem mass spectrometry identifies proteins phosphorylated by cyclic AMP-dependent protein kinase when sea urchin sperm undergo the acrosome reaction., Su YH, Chen SH, Zhou H, Vacquier VD., Dev Biol. September 1, 2005; 285 (1): 116-25.


A flagellar K(+)-dependent Na(+)/Ca(2+) exchanger keeps Ca(2+) low in sea urchin spermatozoa., Su YH, Vacquier VD., Proc Natl Acad Sci U S A. May 14, 2002; 99 (10): 6743-8.

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