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Profile Publications(56)

Publications By Maria I Arnone

Results 1 - 50 of 56 results

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A New Model Organism to Investigate Extraocular Photoreception: Opsin and Retinal Gene Expression in the Sea Urchin Paracentrotus lividus., Paganos P, Ullrich-Lüter E, Caccavale F, Zakrzewski A, Voronov D, Fournon-Berodia I, Cocurullo M, Lüter C, Arnone MI., Cells. 11 (17):               

Plastic leachate-induced toxicity during sea urchin embryonic development: Insights into the molecular pathways affected by PVC., Paganos P, Ullmann CV, Gaglio D, Bonanomi M, Salmistraro N, Arnone MI, Jimenez-Guri E., Sci Total Environ. December 13, 2022; 864 160901.

Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins., Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic O., Sci Adv. December 2, 2022; 8 (48): eabn2258.

An ancestral Wnt-Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes., Schwaiger M, Andrikou C, Dnyansagar R, Murguia PF, Paganos P, Voronov D, Zimmermann B, Lebedeva T, Schmidt HA, Genikhovich G, Benvenuto G, Arnone MI, Technau U., Nat Ecol Evol. December 1, 2022; 6 (12): 1921-1939.

Integrating single cell transcriptomics and volume electron microscopy confirms the presence of pancreatic acinar-like cells in sea urchins., Paganos P, Ronchi P, Carl J, Mizzon G, Martinez P, Benvenuto G, Arnone MI., Front Cell Dev Biol. September 15, 2022; 10 991664.          

FISH for All: A Fast and Efficient Fluorescent In situ Hybridization (FISH) Protocol for Marine Embryos and Larvae., Paganos P, Caccavale F, La Vecchia C, D'Aniello E, D'Aniello S, Arnone MI., Front Physiol. April 19, 2022; 13 878062.        

Ovothiol ensures the correct developmental programme of the sea urchin Paracentrotus lividus embryo., Milito A, Cocurullo M, Columbro A, Nonnis S, Tedeschi G, Castellano I, Arnone MI, Palumbo A., Open Biol. January 1, 2022; 12 (1): 210262.              

Single-cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome., Paganos P, Voronov D, Musser JM, Arendt D, Arnone MI., Elife. November 25, 2021; 10                                         

Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus., Tsironis I, Paganos P, Gouvi G, Tsimpos P, Stamopoulou A, Arnone MI, Flytzanis CN., Dev Biol. July 1, 2021; 475 131-144.

Post-metamorphic skeletal growth in the sea urchin Paracentrotus lividus and implications for body plan evolution., Thompson JR, Paganos P, Benvenuto G, Arnone MI, Oliveri P., Evodevo. March 16, 2021; 12 (1): 3.          

Developmental toxicity of plastic leachates on the sea urchin Paracentrotus lividus., Rendell-Bhatti F, Paganos P, Pouch A, Mitchell C, D'Aniello S, Godley BJ, Pazdro K, Arnone MI, Jimenez-Guri E., Environ Pollut. January 15, 2021; 269 115744.

ATAC-Seq for Assaying Chromatin Accessibility Protocol Using Echinoderm Embryos., Magri MS, Voronov D, Ranđelović J, Cuomo C, Gómez-Skarmeta JL, Arnone MI., Methods Mol Biol. January 1, 2021; 2219 253-265.

Methodology for Whole Mount and Fluorescent RNA In Situ Hybridization in Echinoderms: Single, Double, and Beyond., Perillo M, Paganos P, Spurrell M, Arnone MI, Wessel GM., Methods Mol Biol. January 1, 2021; 2219 195-216.

Unravelling the evolutionary history of kisspeptin., Arnone MI, Oliveri P., Elife. June 15, 2020; 9   

Development and evolution of gut structures: from molecules to function., Annunziata R, Andrikou C, Perillo M, Cuomo C, Arnone MI., Cell Tissue Res. September 1, 2019; 377 (3): 445-458.

Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity., Lowe EK, Cuomo C, Voronov D, Arnone MI., Methods Cell Biol. January 1, 2019; 151 115-126.

The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci., Lowe EK, Garm AL, Ullrich-Lüter E, Cuomo C, Arnone MI., BMC Evol Biol. November 12, 2018; 18 (1): 168.          

Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin Strongylocentrotus purpuratus: Neurochemical Complexity in a "Simple" Nervous System., Wood NJ, Mattiello T, Rowe ML, Ward L, Perillo M, Arnone MI, Elphick MR, Oliveri P., Front Endocrinol (Lausanne). August 6, 2018; 9 628.            

New Neuronal Subtypes With a "Pre-Pancreatic" Signature in the Sea Urchin Stongylocentrotus purpuratus., Perillo M, Paganos P, Mattiello T, Cocurullo M, Oliveri P, Arnone MI., Front Endocrinol (Lausanne). August 6, 2018; 9 650.            

SoxB2 in sea urchin development: implications in neurogenesis, ciliogenesis and skeletal patterning., Anishchenko E, Arnone MI, D'Aniello S., Evodevo. January 22, 2018; 9 5.          

Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes., Burguera D, Marquez Y, Racioppi C, Permanyer J, Torres-Méndez A, Esposito R, Albuixech-Crespo B, Fanlo L, D'Agostino Y, Gohr A, Navas-Perez E, Riesgo A, Cuomo C, Benvenuto G, Christiaen LA, Martí E, D'Aniello S, Spagnuolo A, Ristoratore F, Arnone MI, Garcia-Fernàndez J, Irimia M., Nat Commun. November 27, 2017; 8 (1): 1799.              

Omics approaches to study gene regulatory networks for development in echinoderms., Lowe EK, Cuomo C, Arnone MI., Brief Funct Genomics. September 1, 2017; 16 (5): 299-308.

An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo., Rizzo F, Coffman JA, Arnone MI., Dev Biol. August 1, 2016; 416 (1): 173-186.

Echinoderm systems for gene regulatory studies in evolution and development., Arnone MI, Andrikou C, Annunziata R., Curr Opin Genet Dev. August 1, 2016; 39 129-137.

A pancreatic exocrine-like cell regulatory circuit operating in the upper stomach of the sea urchin Strongylocentrotus purpuratus larva., Perillo M, Wang YJ, Leach SD, Arnone MI., BMC Evol Biol. May 26, 2016; 16 (1): 117.              

Substituting mouse transcription factor Pou4f2 with a sea urchin orthologue restores retinal ganglion cell development., Mao CA, Agca C, Mocko-Strand JA, Wang J, Ullrich-Lüter E, Pan P, Wang SW, Arnone MI, Frishman LJ, Klein WH., Proc Biol Sci. March 16, 2016; 283 (1826): 20152978.          

Opsin evolution in the Ambulacraria., D'Aniello S, Delroisse J, Valero-Gracia A, Lowe EK, Byrne M, Cannon JT, Halanych KM, Elphick MR, Mallefet J, Kaul-Strehlow S, Lowe CJ, Flammang P, Ullrich-Lüter E, Wanninger A, Arnone MI., Mar Genomics. December 1, 2015; 24 Pt 2 177-83.

Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm., Andrikou C, Pai CY, Su YH, Arnone MI., Elife. July 28, 2015; 4                                       

Reconstructing SALMFamide Neuropeptide Precursor Evolution in the Phylum Echinodermata: Ophiuroid and Crinoid Sequence Data Provide New Insights., Elphick MR, Semmens DC, Blowes LM, Levine J, Lowe CJ, Arnone MI, Clark MS., Front Endocrinol (Lausanne). February 2, 2015; 6 2.        

High opsin diversity in a non-visual infaunal brittle star., Delroisse J, Ullrich-Lüter E, Ortega-Martinez O, Dupont S, Arnone MI, Mallefet J, Flammang P., BMC Genomics. November 28, 2014; 15 1035.                

Characterization of insulin-like peptides (ILPs) in the sea urchin Strongylocentrotus purpuratus: insights on the evolution of the insulin family., Perillo M, Arnone MI., Gen Comp Endocrinol. September 1, 2014; 205 68-79.

A dynamic regulatory network explains ParaHox gene control of gut patterning in the sea urchin., Annunziata R, Arnone MI., Development. June 1, 2014; 141 (12): 2462-72.

Pattern and process during sea urchin gut morphogenesis: the regulatory landscape., Annunziata R, Perillo M, Andrikou C, Cole AG, Martinez P, Arnone MI., Genesis. March 1, 2014; 52 (3): 251-68.

Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors., Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI., Evodevo. December 2, 2013; 4 (1): 33.              

MicroRNAs support the monophyly of enteropneust hemichordates., Peterson KJ, Su YH, Arnone MI, Swalla B, King BL., J Exp Zool B Mol Dev Evol. September 1, 2013; 320 (6): 368-74.

C-opsin expressing photoreceptors in echinoderms., Ullrich-Lüter EM, D'Aniello S, Arnone MI., Integr Comp Biol. July 1, 2013; 53 (1): 27-38.

Intact cluster and chordate-like expression of ParaHox genes in a sea star., Annunziata R, Martinez P, Arnone MI., BMC Biol. June 27, 2013; 11 68.            

Unique system of photoreceptors in sea urchin tube feet., Ullrich-Lüter EM, Dupont S, Arboleda E, Hausen H, Arnone MI., Proc Natl Acad Sci U S A. May 17, 2011; 108 (20): 8367-72.

Fluorescent in situ hybridization reveals multiple expression domains for SpBrn1/2/4 and identifies a unique ectodermal cell type that co-expresses the ParaHox gene SpLox., Cole AG, Arnone MI., Gene Expr Patterns. June 1, 2009; 9 (5): 324-8.

Two ParaHox genes, SpLox and SpCdx, interact to partition the posterior endoderm in the formation of a functional gut., Cole AG, Rizzo F, Martinez P, Fernandez-Serra M, Arnone MI., Development. February 1, 2009; 136 (4): 541-9.

Genetic organization and embryonic expression of the ParaHox genes in the sea urchin S. purpuratus: insights into the relationship between clustering and colinearity., Arnone MI, Rizzo F, Annunciata R, Cameron RA, Peterson KJ, Martínez P., Dev Biol. December 1, 2006; 300 (1): 63-73.

Identification and developmental expression of the ets gene family in the sea urchin (Strongylocentrotus purpuratus)., Rizzo F, Fernandez-Serra M, Squarzoni P, Archimandritis A, Arnone MI., Dev Biol. December 1, 2006; 300 (1): 35-48.

The sea urchin kinome: a first look., Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, Raisch M, Roux MM, Lepage T, Gache C, McClay DR, Manning G., Dev Biol. December 1, 2006; 300 (1): 180-93.

Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome., Raible F, Tessmar-Raible K, Arboleda E, Kaller T, Bork P, Arendt D, Arnone MI., Dev Biol. December 1, 2006; 300 (1): 461-75.

The genome of the sea urchin Strongylocentrotus purpuratus., null null, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R., Science. November 10, 2006; 314 (5801): 941-52.

A MAPK pathway is involved in the control of mitosis after fertilization of the sea urchin egg., Zhang WL, Huitorel P, Glass R, Fernandez-Serra M, Arnone MI, Chiri S, Picard A, Ciapa B., Dev Biol. June 1, 2005; 282 (1): 192-206.

Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo., Fernandez-Serra M, Consales C, Livigni A, Arnone MI., Dev Biol. April 15, 2004; 268 (2): 384-402.

Using reporter genes to study cis-regulatory elements., Arnone MI, Dmochowski IJ, Gache C., Methods Cell Biol. January 1, 2004; 74 621-52.

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo., Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H., Dev Biol. June 1, 2002; 246 (1): 162-90.

Functional characterization of Ets-binding sites in the sea urchin embryo: three base pair conversions redirect expression from mesoderm to ectoderm and endoderm., Consales C, Arnone MI., Gene. April 3, 2002; 287 (1-2): 75-81.

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