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| macromere | 16-cell stage to 16-cell stage | |
| macromere daughter cell tier | 28-cell stage to 32-cell stage | |
| madreporite | early juvenile stage to undefined | |
| mature oocyte | mature oocyte stage to mature oocyte stage | |
| meiotic spindle | fully grown oocyte with off-centered germinal vesicle stage to fully grown oocyte with off-centered germinal vesicle stage | |
| mesentery | early juvenile stage to adult stage | |
| mesoderm | 16-cell stage to competent pluteus larva stage | |
| mesomere | 16-cell stage to 16-cell stage | |
| micromere | 16-cell stage to 28-cell stage | |
| microtubule | undefined | |
| microvillus | 1-cell stage to 1-cell stage | |
| midgut | mid-gastrula stage to early pluteus larva stage | |
| mitochondrion | undefined | |
| mitotic spindle | 1-cell stage to undefined | |
| mouth | early pluteus larva stage to adult stage | |
| multicellular organism | 2-cell stage to adult stage | |
| multipolar neuron | undefined | |
| muscle | undefined | |
| muscle precursor cell | late gastrula stage to early pluteus larva stage | |
| muscular system | early pluteus larva stage to adult stage |
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