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Tutorial Videos

1. Introducing the new Echinobase

Title Movie Author Content
Introducing the new Echinobase Echinobase Team EchinoClub presentaion of the new Echinobase on 24-Sep-2021

2. Echinobase tutorials:

Title Movie Author Content
Dive into Echinobase Cheryl Telmer This tutorial video outlines the Community, Literature, Resources and Genomics functions available on Echinobase.
Data Download tutorial Cheryl Telmer This tutorial video describes data files available for download on Echinobase.
Echinobase Identifiers Cheryl Telmer This tutorial video briefly explains some of the features of searching Echinobase for genes.

3. JBrowse tutorials:

More video tutorials and documents for Echinobase are under development. The following videos from our sister MOD, Xenbase, have been included in the meantime to demonstrate common JBrowse concepts.
Title Movie Author Content
Introduction to JBrowse Vaneet Lotay Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome.
JBrowse tutorial 1 Vaneet Lotay Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type (UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene.
JBrowse tutorial 2 Vaneet Lotay Saving data from a track on JBrowse for a particular region of interest in the genome.
JBrowse tutorial 3 Vaneet Lotay How to add a local/custom track from your PC to the JBrowse browser at Xenbase.
JBrowse tutorial 4 Vaneet Lotay Exploring Xenbase GEO tracks with the faceted track selector in JBrowse.
FlyBase JBrowse tutorial FlyBase Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc.