Echinobase will be undergoing a hardware update June 14 and 15, 2023 and therefore will be unavailable those days.
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EchinoClub presentaion of the new Echinobase on 24-Sep-2021
2. Echinobase tutorials:
Dive into Echinobase
This tutorial video outlines the Community, Literature, Resources and Genomics functions available on Echinobase.
Data Download tutorial
This tutorial video describes data files available for download on Echinobase.
This tutorial video briefly explains some of the features of searching Echinobase for genes.
3. JBrowse tutorials:
More video tutorials and documents for Echinobase are under development. The following videos from our sister MOD, Xenbase, have been included in the meantime to demonstrate common JBrowse concepts.
Introduction to JBrowse
Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome.
JBrowse tutorial 1
Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type
(UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene.
JBrowse tutorial 2
Saving data from a track on JBrowse for a particular region of interest in the genome.
JBrowse tutorial 3
How to add a local/custom track from your PC to the JBrowse browser at Xenbase.
JBrowse tutorial 4
Exploring Xenbase GEO tracks with the faceted track selector in JBrowse.
FlyBase JBrowse tutorial
Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc.