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Echinobase

Summary Attributions Wiki
ECB-GRNA-26398304
gRNA Name: prdm1 gRNA5
Synonyms: Pm_BLIMP1_2
Genomic Target: prdm1
Derived from:

Sequence: 5' GGCCATGGAGACGGCAGCTG 3'



Genomic Target P. miniata
Identities 19/20
genome
gRNA
 
5' CAGCTGCCGTCTCCATGGCA 3'
   ||||||||||||||||||| 
3' GTCGACGGCAGAGGTACCGG 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
P. miniata 3.0 NW_024037074.1:10784141..10784160 19/20 Antisense target prdm1
NW_024037061.1:15533650..15533669 17/20 Sense off-target LOC119730941
NW_024037061.1:15556764..15556783 17/20 Sense off-target LOC119730612
NW_024037047.1:8647245..8647264 16/20 Sense off-target nr1d1l1
NW_024037057.1:7998136..7998155 16/20 Antisense off-target LOC119725625
NW_024037059.1:22205054..22205073 16/20 Antisense off-target LOC119728211
L. variegatus 3.0 chr16:4627919..4627938 16/20 Sense off-target LOC121430011
Publications
???morpholino.displaySummary.papersFirst??? mRNA splicing variants of the transcription factor Blimp1 differentially regulate germline genes in echinoderms., Dev Biol 2025  
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