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Echinobase

Summary Attributions Wiki
ECB-GRNA-26398303
gRNA Name: prdm1 gRNA4
Synonyms: Pm_BLIMP1_1
Genomic Target: prdm1
Derived from:

Sequence: 5' GGAGAGACTATATCCCCCAG 3'



Genomic Target P. miniata
Identities 19/20
genome
gRNA
 
5' CTGGGGGATATAGTCTCTCG 3'
   ||||||||||||||||||| 
3' GACCCCCTATATCAGAGAGG 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145596.1:14997748..14997767 17/20 Antisense unknown
P. miniata 3.0 NW_024037074.1:10785842..10785861 19/20 Antisense target prdm1
L. variegatus 3.0 chr8:16243780..16243799 17/20 Antisense off-target LOC121420050
chr13:5876302..5876321 17/20 Antisense off-target LOC121426041
chr14:2969159..2969178 17/20 Antisense off-target LOC121427427
chr2:48654877..48654896 17/20 Sense off-target LOC121406842
chr14:4433143..4433162 16/20 Sense off-target LOC121427880
chr19:18931883..18931902 17/20 Sense unknown
chr9:23043486..23043505 17/20 Antisense unknown
chr18:21497082..21497101 17/20 Sense unknown
chr8:31038916..31038935 17/20 Sense unknown
chr9:14013320..14013339 17/20 Antisense unknown
chr1:15367188..15367207 17/20 Sense unknown
chr10:12001870..12001889 17/20 Antisense unknown
chr10:24500047..24500066 17/20 Antisense unknown
chr10:28437403..28437422 17/20 Sense unknown
chr10:4822714..4822733 17/20 Antisense unknown
chr11:22696515..22696534 17/20 Sense unknown
chr12:35716173..35716192 17/20 Antisense unknown
chr13:12158222..12158241 17/20 Sense unknown
chr13:5577106..5577125 17/20 Sense unknown
chr13:7167667..7167686 17/20 Antisense unknown
chr14:27566511..27566530 17/20 Antisense unknown
chr15:30065852..30065871 17/20 Antisense unknown
chr15:469337..469356 17/20 Sense unknown
chr16:14369834..14369853 17/20 Antisense unknown
chr16:18062594..18062613 17/20 Sense unknown
chr16:18146304..18146323 17/20 Antisense unknown
chr17:14226793..14226812 17/20 Sense unknown
chr3:4820498..4820517 17/20 Sense unknown
chr3:61347146..61347165 17/20 Sense unknown
chr3:61376677..61376696 17/20 Sense unknown
chr4:2104313..2104332 17/20 Antisense unknown
chr4:23813260..23813279 17/20 Sense unknown
chr4:28821678..28821697 17/20 Antisense unknown
chr4:61326803..61326822 17/20 Sense unknown
chr4:61510450..61510469 17/20 Sense unknown
chr5:22481747..22481766 17/20 Sense unknown
chr6:102907..102926 17/20 Sense unknown
chr6:22187470..22187489 17/20 Sense unknown
chr6:29642386..29642405 17/20 Antisense unknown
chr7:7387625..7387644 17/20 Sense unknown
chr8:14920713..14920732 17/20 Sense unknown
chr17:18807089..18807108 16/20 Sense unknown
chr17:17087550..17087569 16/20 Sense unknown
chr5:7084623..7084642 16/20 Sense unknown
Publications
???morpholino.displaySummary.papersFirst??? mRNA splicing variants of the transcription factor Blimp1 differentially regulate germline genes in echinoderms., Dev Biol 2025  
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