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Echinobase

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ECB-MORPHOLINO-26398296
Morpholino Name: prdm1 MO6
Synonyms: Sp_Blimp1/Krox Alpha MASO
Target mRNA: prdm1
Derived from:

Morpholino Type: translation blocking morpholino
Sequence: 5' GAAGACCTGATCGAAGACCTCGTTG 3'

Source: Gene Tools LLC


Target mRNA S. purpuratus
Identities 22/25
genome
MO
 
5' CGATCAGGTCTTCGATCAGGTCTTC 3'
   | |  ||||||||||||||||||||
3' GTTGCTCCAGAAGCTAGTCCAGAAG 5'
      
Genomic Alignments Position Identity Strand Target Target mRNA
S. purpuratus 5.0 NW_022145607.1:33442076..33442100 22/25 Antisense target prdm1
NW_022145611.1:41433582..41433606 21/25 Sense off-target LOC585801
NW_022145611.1:39251846..39251870 21/25 Sense off-target LOC115929488
P. miniata 3.0 NW_024037059.1:21296247..21296271 21/25 Antisense off-target zranb2
NW_024037063.1:13892277..13892301 21/25 Antisense off-target washc1
NW_024037068.1:25003400..25003424 21/25 Sense off-target LOC119735409
XR_005272161.1:2479..2503 21/25 off-target LOC119735409
XR_005272163.1:2374..2398 21/25 off-target LOC119735409
XR_005272162.1:2252..2276 21/25 off-target LOC119735409
NW_024037059.1:12710485..12710509 21/25 Antisense unknown
Publications
???morpholino.displaySummary.papersFirst??? mRNA splicing variants of the transcription factor Blimp1 differentially regulate germline genes in echinoderms., Dev Biol 2025  
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