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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396944
gRNA Name: LOC588806 gRNA24
Synonyms: HpPKS 134-157
Genomic Target: LOC588806
Derived from:

Sequence: 5' GGGAACCTTCCAGAAGTCAT 3'



Genomic Target S. purpuratus
Identities 19/20
genome
gRNA
 
5' ATGACTTCTGGAAGGTTCTC 3'
   |||||||||||||||||| |
3' TACTGAAGACCTTCCAAGGG 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145610.1:2715741..2715760 19/20 Antisense target LOC588806
NW_022145615.1:23570350..23570369 18/20 Antisense off-target LOC576828
NW_022145615.1:23621529..23621548 18/20 Antisense off-target LOC115920777
NW_022145599.1:31941559..31941578 17/20 Antisense off-target LOC762517
NW_022145613.1:4155376..4155395 16/20 Antisense off-target kpnb1
NW_022145596.1:16571390..16571409 16/20 Sense off-target LOC582967
NW_022145612.1:57955845..57955864 18/20 Antisense unknown
NW_022145615.1:23610521..23610540 18/20 Sense unknown
NW_022145599.1:37731303..37731322 16/20 Sense unknown
NW_022145528.1:648211..648230 16/20 Antisense unknown
P. miniata 3.0 NW_024037070.1:4235974..4235993 18/20 Antisense off-target LOC119739366
NW_024037072.1:15731676..15731695 17/20 Antisense off-target snx27
NW_024037059.1:33334814..33334833 17/20 Sense off-target LOC119728736
NW_024037063.1:5167822..5167841 16/20 Sense off-target LOC119732092
NW_024037068.1:5527847..5527866 16/20 Sense off-target LOC119735385
NW_024037064.1:2807448..2807467 17/20 Antisense unknown
NW_024037058.1:2880771..2880790 16/20 Antisense unknown
NW_024037068.1:4352643..4352662 16/20 Sense unknown
NW_024037068.1:5016727..5016746 16/20 Sense unknown
L. variegatus 3.0 chr16:6483507..6483526 18/20 Antisense off-target tmlhe
XR_005969990.1:3401..3420 17/20 off-target LOC121415337
chr10:24184624..24184643 16/20 Sense off-target LOC121422742
chr11:29672326..29672345 16/20 Antisense off-target LOC121423914
chr12:17714628..17714647 16/20 Sense off-target LOC121425324
chr2:78843173..78843192 16/20 Sense off-target LOC121409155
chr8:14452807..14452826 16/20 Antisense off-target LOC121420028
chr8:9477824..9477843 16/20 Sense off-target LOC121419943
chr3:22726867..22726886 16/20 Antisense unknown
Publications
???morpholino.displaySummary.papersFirst??? Genetic manipulation of the pigment pathway in a sea urchin reveals distinct lineage commitment prior to metamorphosis in the bilateral to radial body plan transition., Sci Rep 2020     
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