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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396943
gRNA Name: LOC588806 gRNA23
Synonyms: HpPKS 82-105
Genomic Target: LOC588806
Derived from:

Sequence: 5' GGAGCAATAAAACCAGCTGG 3'



Genomic Target S. purpuratus
Identities 19/20
genome
gRNA
 
5' CCAGCTGGTTTTATTGCTTC 3'
   |||||||||||||||||| |
3' GGTCGACCAAAATAACGAGG 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145610.1:2714711..2714730 19/20 Sense target LOC588806
NW_022145600.1:10129847..10129866 18/20 Antisense off-target LOC105436465
NW_022145611.1:38774885..38774904 17/20 Antisense off-target LOC575504
NW_022145604.1:6841268..6841287 17/20 Antisense off-target LOC105436496
NW_022145604.1:6841268..6841287 17/20 Antisense off-target LOC115925990
NW_022145611.1:41017873..41017892 17/20 Antisense off-target LOC115919066
NW_022145595.1:3212202..3212221 17/20 Antisense off-target LOC100890071
NW_022145611.1:8793514..8793533 17/20 Antisense unknown
NW_022145615.1:3064298..3064317 17/20 Antisense unknown
NW_022145596.1:1949364..1949383 16/20 Antisense unknown
NW_022145601.1:11226148..11226167 16/20 Antisense unknown
P. miniata 3.0 NW_024037072.1:19805113..19805132 16/20 Antisense off-target LOC119742175
NW_024037072.1:29453823..29453842 16/20 Antisense off-target LOC119741455
NW_024037054.1:5020149..5020168 16/20 Sense off-target LOC119722741
NW_024037076.1:17465476..17465495 16/20 Sense unknown
NW_024037053.1:4653651..4653670 16/20 Sense unknown
L. variegatus 3.0 chr2:22774933..22774952 19/20 Sense off-target LOC121407598
chr2:29951929..29951948 19/20 Sense off-target LOC121407799
chr4:18043188..18043207 18/20 Antisense off-target LOC121413540
chr15:27083920..27083939 18/20 Sense off-target LOC121428528
chr3:32157463..32157482 17/20 Sense off-target tdrkh
chr3:14165385..14165404 17/20 Antisense off-target LOC121410280
chr3:20874986..20875005 17/20 Antisense off-target LOC121410469
chr12:10734237..10734256 17/20 Antisense off-target LOC121425162
chr15:3723576..3723595 17/20 Antisense off-target LOC121428973
chr16:6991021..6991040 17/20 Sense off-target LOC121429628
chr17:5864734..5864753 17/20 Sense off-target LOC121431189
chr19:16673206..16673225 17/20 Antisense off-target LOC121406068
chr15:8823268..8823287 16/20 Sense off-target gapvd1
chr4:41239745..41239764 17/20 Antisense unknown
chr4:8017958..8017977 17/20 Antisense unknown
chr5:27441281..27441300 17/20 Antisense unknown
chr5:27503786..27503805 17/20 Antisense unknown
chr5:47223971..47223990 17/20 Antisense unknown
chr6:46139504..46139523 17/20 Sense unknown
chr6:46549355..46549374 17/20 Antisense unknown
chr7:35139819..35139838 17/20 Antisense unknown
chr8:3444317..3444336 17/20 Antisense unknown
chr8:37809003..37809022 17/20 Antisense unknown
chr9:10782268..10782287 17/20 Sense unknown
chr9:22935003..22935022 17/20 Antisense unknown
chr12:15546592..15546611 17/20 Sense unknown
chr13:15476387..15476406 17/20 Sense unknown
chr13:21757593..21757612 17/20 Sense unknown
chr13:32633546..32633565 17/20 Antisense unknown
chr15:20878414..20878433 17/20 Antisense unknown
chr15:25733404..25733423 17/20 Antisense unknown
chr5:13779372..13779391 16/20 Sense unknown
chr8:40085314..40085333 16/20 Antisense unknown
chr9:3691440..3691459 16/20 Antisense unknown
chr17:9283562..9283581 16/20 Sense unknown
chr17:9305137..9305156 16/20 Sense unknown
Publications
???morpholino.displaySummary.papersFirst??? Genetic manipulation of the pigment pathway in a sea urchin reveals distinct lineage commitment prior to metamorphosis in the bilateral to radial body plan transition., Sci Rep 2020     
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