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ECB-GRNA-26396916
gRNA Name:
ctcf gRNA4
Synonyms: HpCTCF sgRNA#4
Genomic Target: ctcf
Derived from:
PAM Sequence: AGG
Sequence: 5' GGCATTAGGATTGCTGATGT 3'
Synonyms: HpCTCF sgRNA#4
Genomic Target: ctcf
Derived from:
PAM Sequence: AGG
Sequence: 5' GGCATTAGGATTGCTGATGT 3'

Genomic Target | S. purpuratus | ||||||
Identities | 20/20 | ||||||
genome
gRNA
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5' ACATCAGCAATCCTAATGCC 3' |||||||||||||||||||| 3' TGTAGTCGTTAGGATTACGG 5' |
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Genomic Alignments ![]() |
Position | Identity | Strand | Target | Genomic Target | S. purpuratus 5.0 | NW_022145614.1:9068283..9068302 | 20/20 | Antisense | target | ctcf |
NW_022145540.1:123747..123766 | 19/20 | Antisense | off-target | LOC593001 | |||
NW_022145605.1:20377387..20377406 | 17/20 | Sense | unknown | ||||
NW_022145605.1:20533392..20533411 | 17/20 | Sense | unknown | ||||
P. miniata 3.0 | NW_024037070.1:4918437..4918456 | 17/20 | Sense | off-target | LOC119739243 | ||
NW_024037073.1:7598393..7598412 | 17/20 | Sense | off-target | LOC119742559 | |||
NW_024037069.1:10386896..10386915 | 17/20 | Antisense | off-target | LOC119738824 | |||
L. variegatus 3.0 | chr2:23514745..23514764 | 19/20 | Antisense | off-target | LOC121407614 | ||
chr2:30685345..30685364 | 19/20 | Antisense | off-target | LOC121407816 | |||
chr15:12476484..12476503 | 18/20 | Antisense | off-target | LOC121429090 | |||
chr8:10687399..10687418 | 17/20 | Sense | off-target | LOC121420638 | |||
chr9:10389559..10389578 | 18/20 | Antisense | unknown | ||||
chr9:10389612..10389631 | 18/20 | Antisense | unknown | ||||
chr9:10389665..10389684 | 18/20 | Antisense | unknown | ||||
chr9:10389718..10389737 | 18/20 | Antisense | unknown | ||||
chr9:10389771..10389790 | 18/20 | Antisense | unknown | ||||
chr9:10389824..10389843 | 18/20 | Antisense | unknown | ||||
chr9:10389877..10389896 | 18/20 | Antisense | unknown | ||||
chr9:10389930..10389949 | 18/20 | Antisense | unknown | ||||
chr9:10390035..10390054 | 18/20 | Antisense | unknown | ||||
chr9:10389453..10389472 | 18/20 | Antisense | unknown | ||||
chr9:10389506..10389525 | 18/20 | Antisense | unknown | ||||
Publications | |||||||
???morpholino.displaySummary.papersFirst??? |
The crucial role of CTCF in mitotic progression during early development of sea urchin., Dev Growth Differ 2023 |
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???morpholino.displaySummary.papersRecent??? | |||||||
???morpholino.displaySummary.papersAll??? |