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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396914

gRNA Name: ctcf gRNA2
Synonyms: HpCTCF sgRNA#2
Genomic Target: ctcf
Derived from:

PAM Sequence: AGG
Sequence: 5' CGTAGTGGGTGTGGTCATGG 3'



Genomic Target
Identities
genome
gRNA
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145611.1:20498336..20498355 18/20 Sense off-target LOC576796
NW_022145540.1:127770..127789 18/20 Antisense off-target LOC593001
NW_022145597.1:14912252..14912271 18/20 Antisense off-target LOC764122
NW_022145601.1:4080941..4080960 17/20 Antisense off-target LOC594281
NW_022145526.1:1914778..1914797 17/20 Sense off-target LOC753533
NW_022145575.1:282029..282048 17/20 Sense off-target LOC589781
NW_022145596.1:12805237..12805256 17/20 Sense off-target LOC578224
NW_022145597.1:14912318..14912337 17/20 Antisense off-target LOC764122
NW_022145604.1:17848570..17848589 17/20 Antisense off-target LOC105439323
NW_022145606.1:15350705..15350724 17/20 Sense off-target LOC115927248
NW_022145599.1:406520..406539 16/20 Sense off-target b9d1
NW_022145599.1:406635..406654 16/20 Sense off-target b9d1
NW_022145611.1:30483971..30483990 16/20 Sense off-target LOC764088
NW_022145598.1:26929943..26929962 16/20 Sense off-target LOC587965
NW_022145603.1:19760944..19760963 16/20 Sense off-target LOC115925472
NW_022145528.1:413699..413718 16/20 Sense off-target LOC115922699
NW_022145528.1:413818..413837 16/20 Sense off-target LOC115922699
NW_022145598.1:26937082..26937101 16/20 Sense unknown
NW_022145603.1:19769972..19769991 16/20 Sense unknown
NW_022145603.1:19792975..19792994 16/20 Sense unknown
NW_022145603.1:19809690..19809709 16/20 Sense unknown
NW_022145598.1:26923155..26923174 16/20 Antisense unknown
P. miniata 3.0 NW_024037064.1:16110323..16110342 18/20 Antisense off-target LOC119733131
NW_024037065.1:5904553..5904572 18/20 Sense off-target LOC119733903
NW_024037065.1:6097510..6097529 18/20 Sense off-target LOC119733911
NW_024037075.1:2702528..2702547 18/20 Sense off-target LOC119719177
NW_024037066.1:3348182..3348201 17/20 Sense off-target LOC119734274
NW_024037063.1:22490933..22490952 17/20 Sense off-target LOC119732038
NW_024037059.1:17491233..17491252 16/20 Antisense off-target herc2
NW_024037056.1:15277927..15277946 16/20 Sense off-target LOC119724842
NW_024037071.1:4081574..4081593 16/20 Sense off-target LOC119739942
NW_024037071.1:6602289..6602308 16/20 Sense off-target LOC119739978
NW_024037073.1:4590036..4590055 16/20 Sense off-target LOC119743562
NW_024037072.1:33915228..33915247 17/20 Antisense unknown
L. variegatus 3.0 chr11:13465564..13465583 18/20 Sense off-target LOC121424092
chr11:9599134..9599153 18/20 Sense off-target LOC121423876
XR_005968746.1:2008..2027 17/20 off-target LOC121406041
XR_005968747.1:1986..2005 17/20 off-target LOC121406041
XR_005968748.1:1959..1978 17/20 off-target LOC121406041
chr13:17929508..17929527 17/20 Antisense off-target LOC121426122
chr6:25813372..25813391 17/20 Antisense off-target LOC121417662
chr9:17714873..17714892 17/20 Sense off-target LOC121421853
chr5:1295064..1295083 16/20 Sense off-target tpm1
chr1:36272679..36272698 16/20 Sense off-target LOC121412976
chr15:1255070..1255089 16/20 Sense off-target LOC121428663
chr2:48906598..48906617 16/20 Sense off-target LOC121408234
chr3:16549948..16549967 16/20 Antisense off-target LOC121410349
chr3:65032217..65032236 16/20 Sense off-target LOC121412265
chr6:12797340..12797359 16/20 Sense off-target LOC121416844
chr17:26396397..26396416 17/20 Antisense unknown
chr17:26408840..26408859 17/20 Antisense unknown
chr17:26419986..26420005 17/20 Antisense unknown
chr19:5837940..5837959 17/20 Antisense unknown
chr17:26418919..26418938 16/20 Antisense unknown
chr17:26422556..26422575 16/20 Antisense unknown
Publications
???morpholino.displaySummary.papersFirst??? The crucial role of CTCF in mitotic progression during early development of sea urchin., Dev Growth Differ 2023  
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