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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396913
gRNA Name: ctcf gRNA1
Synonyms: HpCTCF sgRNA#1
Genomic Target: ctcf
Derived from:

PAM Sequence: AGG
Sequence: 5' TGGAGGGGAGCCTGGTACTG 3'



Genomic Target S. purpuratus
Identities 19/20
genome
gRNA
 
5' CAGTACCAGGCTCACCTCCA 3'
   ||||||||||||| ||||||
3' GTCATGGTCCGAGGGGAGGT 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145614.1:9072291..9072310 19/20 Sense target ctcf
NW_022145540.1:127705..127724 19/20 Sense off-target LOC593001
NW_022145609.1:32321794..32321813 18/20 Antisense off-target LOC588988
P. miniata 3.0 NW_024037059.1:26601222..26601241 19/20 Antisense off-target LOC119728379
NW_024037061.1:13173632..13173651 17/20 Sense off-target LOC119730419
NW_024037072.1:24780237..24780256 18/20 Antisense unknown
L. variegatus 3.0 chr3:66731040..66731059 18/20 Antisense off-target atp23
chr1:96018771..96018790 18/20 Antisense off-target LOC121429553
chr1:96075459..96075478 18/20 Sense off-target LOC121429561
chr2:23517752..23517771 18/20 Sense off-target LOC121407614
chr2:30689672..30689691 18/20 Sense off-target LOC121407816
Publications
???morpholino.displaySummary.papersFirst??? The crucial role of CTCF in mitotic progression during early development of sea urchin., Dev Growth Differ 2023  
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