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Echinobase

Summary Attributions Wiki
ECB-GRNA-26396384
gRNA Name: LOC578013 gRNA1
Synonyms: DCLK2 gRNA 1
Genomic Target: LOC578013
Derived from:

Sequence: 5' GGTACTGTAACAATGTGTCG 3'



Genomic Target S. purpuratus
Identities 20/20
genome
gRNA
 
5' CGACACATTGTTACAGTACC 3'
   ||||||||||||||||||||
3' GCTGTGTAACAATGTCATGG 5'
      
Genomic Alignments Position Identity Strand Target Genomic Target
S. purpuratus 5.0 NW_022145612.1:1818910..1818929 20/20 Antisense target LOC578013
NW_022145600.1:33680920..33680939 17/20 Antisense off-target LOC577048
NW_022145601.1:5387394..5387413 16/20 Sense off-target neurl4
NW_022145599.1:12071366..12071385 16/20 Antisense off-target ankat1
NW_022145601.1:9984220..9984239 17/20 Antisense unknown
NW_022145614.1:6392404..6392423 17/20 Sense unknown
NW_022145601.1:18989509..18989528 16/20 Sense unknown
NW_022145604.1:22705973..22705992 16/20 Antisense unknown
NW_022145612.1:47370986..47371005 16/20 Sense unknown
NW_022145600.1:27527293..27527312 16/20 Antisense unknown
NW_022145601.1:10770752..10770771 16/20 Sense unknown
NW_022145599.1:21896590..21896609 16/20 Sense unknown
NW_022145599.1:21984670..21984689 16/20 Sense unknown
NW_022145600.1:12599759..12599778 16/20 Antisense unknown
NW_022145600.1:14044671..14044690 16/20 Antisense unknown
P. miniata 3.0 NW_024037054.1:7814339..7814358 17/20 Sense off-target LOC119723228
NW_024037074.1:45661735..45661754 17/20 Sense off-target LOC119744562
NW_024037072.1:7481874..7481893 17/20 Sense unknown
L. variegatus 3.0 chr18:12524315..12524334 18/20 Antisense off-target LOC121431682
chr15:8390699..8390718 17/20 Sense off-target smg7
chr13:31857417..31857436 17/20 Antisense off-target LOC121426201
chr5:9834536..9834555 16/20 Antisense off-target iqgap1
chr1:24506570..24506589 16/20 Antisense off-target LOC121409768
chr1:36237921..36237940 16/20 Antisense off-target LOC121412976
chr10:30296344..30296363 16/20 Sense off-target LOC121422482
chr12:24937957..24937976 17/20 Antisense unknown
chr2:27212941..27212960 17/20 Sense unknown
chr7:33607211..33607230 17/20 Sense unknown
chr7:23493174..23493193 16/20 Sense unknown
chr11:16453447..16453466 16/20 Sense unknown
Publications
???morpholino.displaySummary.papersFirst??? Functional contribution of DCLKs in sea urchin development., Dev Dyn 2021  
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