Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Front Microbiol
2023 Jan 01;14:1234725. doi: 10.3389/fmicb.2023.1234725.
Show Gene links
Show Anatomy links
Rhodobacteraceae dominate the core microbiome of the sea star Odontaster validus (Koehler, 1906) in two opposite geographical sectors of the Antarctic Ocean.
Buschi E
,
Dell'Anno A
,
Tangherlini M
,
Stefanni S
,
Lo Martire M
,
Núñez-Pons L
,
Avila C
,
Corinaldesi C
.
Abstract
Microbiota plays essential roles in the health, physiology, and in adaptation of marine multi-cellular organisms to their environment. In Antarctica, marine organisms have a wide range of unique physiological functions and adaptive strategies, useful for coping with extremely cold conditions. However, the role of microbiota associated with Antarctic organisms in such adaptive strategies is underexplored. In the present study, we investigated the diversity and putative functions of the microbiome of the sea star Odontaster validus, one of the main keystone species of the Antarctic benthic ecosystems. We compared the whole-body bacterial microbiome of sea stars from different sites of the Antarctic Peninsula and Ross Sea, two areas located in two opposite geographical sectors of the Antarctic continent. The taxonomic composition of O. validus microbiomes changed both between and within the two Antarctic sectors, suggesting that environmental and biological factors acting both at large and local scales may influence microbiome diversity. Despite this, one bacterial family (Rhodobacteraceae) was shared among all sea star individuals from the two geographical sectors, representing up to 95% of the microbial core, and suggesting a key functional role of this taxon in holobiont metabolism and well-being. In addition, the genus Roseobacter belonging to this family was also present in the surrounding sediment, implying a potential horizontal acquisition of dominant bacterial core taxa via host-selection processes from the environment.
Adair,
Making a microbiome: the many determinants of host-associated microbial community composition.
2017, Pubmed
Adair,
Making a microbiome: the many determinants of host-associated microbial community composition.
2017,
Pubmed
Aquino,
Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease.
2020,
Pubmed
,
Echinobase
Baum,
Cascading top-down effects of changing oceanic predator abundances.
2009,
Pubmed
Boscaro,
Microbiomes of microscopic marine invertebrates do not reveal signatures of phylosymbiosis.
2022,
Pubmed
Brasier,
DNA barcoding uncovers cryptic diversity in 50% of deep-sea Antarctic polychaetes.
2016,
Pubmed
Bright,
A complex journey: transmission of microbial symbionts.
2010,
Pubmed
Britstein,
Sponge microbiome stability during environmental acquisition of highly specific photosymbionts.
2020,
Pubmed
Buchan,
Overview of the marine roseobacter lineage.
2005,
Pubmed
Burnett,
Subcuticular bacteria from the brittle star Ophiactis balli (Echinodermata: Ophiuroidea) represent a new lineage of extracellular marine symbionts in the alpha subdivision of the class Proteobacteria.
1997,
Pubmed
,
Echinobase
Callahan,
DADA2: High-resolution sample inference from Illumina amplicon data.
2016,
Pubmed
Carrier,
The Hologenome Across Environments and the Implications of a Host-Associated Microbial Repertoire.
2017,
Pubmed
Chiarello,
Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet.
2018,
Pubmed
Chown,
The changing form of Antarctic biodiversity.
2015,
Pubmed
Cleary,
The sponge microbiome within the greater coral reef microbial metacommunity.
2019,
Pubmed
,
Echinobase
Dedysh,
Planctomycetes in boreal and subarctic wetlands: diversity patterns and potential ecological functions.
2019,
Pubmed
Dunphy,
Structure and stability of the coral microbiome in space and time.
2019,
Pubmed
Edgar,
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
2004,
Pubmed
Folmer,
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
1994,
Pubmed
,
Echinobase
Gilbert,
A symbiotic view of life: we have never been individuals.
2012,
Pubmed
Griffiths,
Host genetics and geography influence microbiome composition in the sponge Ircinia campana.
2019,
Pubmed
Hanson,
Beyond biogeographic patterns: processes shaping the microbial landscape.
2012,
Pubmed
Hanson,
Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments.
2019,
Pubmed
Høj,
Crown-of-Thorns Sea Star Acanthaster cf. solaris Has Tissue-Characteristic Microbiomes with Potential Roles in Health and Reproduction.
2018,
Pubmed
,
Echinobase
Ivanova,
Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea grass (Zostera marina).
2004,
Pubmed
,
Echinobase
Jackson,
The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome.
2018,
Pubmed
,
Echinobase
Jacobs,
Freshening of the Ross Sea during the late 20th century.
2002,
Pubmed
Janosik,
Unrecognized Antarctic biodiversity: a case study of the genus Odontaster (Odontasteridae; Asteroidea).
2010,
Pubmed
,
Echinobase
Kearse,
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
2012,
Pubmed
Kim,
Distinct gut microbiotas between southern elephant seals and Weddell seals of Antarctica.
2020,
Pubmed
Klindworth,
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.
2013,
Pubmed
Koskella,
The study of host-microbiome (co)evolution across levels of selection.
2020,
Pubmed
Kumar,
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
2018,
Pubmed
Kwan,
Vertical vs. horizontal transmission of the microbiome in a key disease vector, Ixodes pacificus.
2017,
Pubmed
Larsson,
AliView: a fast and lightweight alignment viewer and editor for large datasets.
2014,
Pubmed
Lawrence,
Subcuticular bacteria associated with two common New Zealand echinoderms: Characterization using 16S rRNA sequence analysis and fluorescence in situ hybridization.
2010,
Pubmed
,
Echinobase
Louca,
Function and functional redundancy in microbial systems.
2018,
Pubmed
Loudon,
Identifying the core microbiome of the sea star Pisaster ochraceus in the context of sea star wasting disease.
2023,
Pubmed
,
Echinobase
McFall-Ngai,
Animals in a bacterial world, a new imperative for the life sciences.
2013,
Pubmed
Moon,
Reconsidering connectivity in the sub-Antarctic.
2017,
Pubmed
Morrow,
A member of the Roseobacter clade, Octadecabacter sp., is the dominant symbiont in the brittle star Amphipholis squamata.
2018,
Pubmed
,
Echinobase
Núñez-Pons,
Exploring the pathology of an epidermal disease affecting a circum-Antarctic sea star.
2018,
Pubmed
,
Echinobase
Pantos,
Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix.
2015,
Pubmed
Parks,
STAMP: statistical analysis of taxonomic and functional profiles.
2014,
Pubmed
Quast,
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
2013,
Pubmed
Raina,
Coral-associated bacteria and their role in the biogeochemical cycling of sulfur.
2009,
Pubmed
Reese,
Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance.
2018,
Pubmed
Rodríguez-Barreras,
The Epibiotic Microbiota of Wild Caribbean Sea Urchin Spines Is Species Specific.
2023,
Pubmed
,
Echinobase
Rozas,
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
2017,
Pubmed
Rubio-Portillo,
Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea.
2018,
Pubmed
Ruocco,
A Metataxonomic Approach Reveals Diversified Bacterial Communities in Antarctic Sponges.
2021,
Pubmed
Sanger,
DNA sequencing with chain-terminating inhibitors.
1977,
Pubmed
Schuelke,
Nematode-associated microbial taxa do not correlate with host phylogeny, geographic region or feeding morphology in marine sediment habitats.
2018,
Pubmed
Schwob,
Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean.
2021,
Pubmed
Shade,
Beyond the Venn diagram: the hunt for a core microbiome.
2012,
Pubmed
Trontelj,
Celebrity with a neglected taxonomy: molecular systematics of the medicinal leech (genus Hirudo).
2005,
Pubmed
Vences,
Deciphering amphibian diversity through DNA barcoding: chances and challenges.
2005,
Pubmed
Vences,
Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians.
2005,
Pubmed
Webster,
Bacterial community structure associated with the Antarctic soft coral, Alcyonium antarcticum.
2007,
Pubmed
Yang,
Species identification through mitochondrial rRNA genetic analysis.
2014,
Pubmed
Zenteno-Devaud,
Feeding Ecology of Odontaster validus under Different Environmental Conditions in the West Antarctic Peninsula.
2022,
Pubmed
,
Echinobase
Zilber-Rosenberg,
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution.
2008,
Pubmed
van de Water,
Host-microbe interactions in octocoral holobionts - recent advances and perspectives.
2018,
Pubmed
van den Hoff,
Bottom-up regulation of a pole-ward migratory predator population.
2014,
Pubmed