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Nucleic Acids Res 2018 Jan 04;46D1:D861-D868. doi: 10.1093/nar/gkx936.
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Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Xenbase ( is an online resource for researchers utilizing Xenopus laevis and Xenopus tropicalis, and for biomedical scientists seeking access to data generated with these model systems. Content is aggregated from a variety of external resources and also generated by in-house curation of scientific literature and bioinformatic analyses. Over the past two years many new types of content have been added along with new tools and functionalities to reflect the impact of high-throughput sequencing. These include new genomes for both supported species (each with chromosome scale assemblies), new genome annotations, genome segmentation, dynamic and interactive visualization for RNA-Seq data, updated ChIP-Seq mapping, GO terms, protein interaction data, ORFeome support, and improved connectivity to other biomedical and bioinformatic resources.

PubMed ID: 29059324
PMC ID: PMC5753396
Article link: Nucleic Acids Res
Grant support: [+]

Species referenced: Echinodermata
Genes referenced: chrd gsk3a impact LOC115929777 LOC578305 LOC586799 LOC594353

Article Images: [+] show captions
References [+] :
Ahmed, A Database of microRNA Expression Patterns in Xenopus laevis. 2016, Pubmed