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ECB-ART-44718
PLoS One 2016 May 04;115:e0155435. doi: 10.1371/journal.pone.0155435.
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The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors.

Epelboin Y , Quintric L , Guévélou E , Boudry P , Pichereau V , Corporeau C .


Abstract
Oysters play an important role in estuarine and coastal marine habitats, where the majority of humans live. In these ecosystems, environmental degradation is substantial, and oysters must cope with highly dynamic and stressful environmental constraints during their lives in the intertidal zone. The availability of the genome sequence of the Pacific oyster Crassostrea gigas represents a unique opportunity for a comprehensive assessment of the signal transduction pathways that the species has developed to deal with this unique habitat. We performed an in silico analysis to identify, annotate and classify protein kinases in C. gigas, according to their kinase domain taxonomy classification, and compared with kinome already described in other animal species. The C. gigas kinome consists of 371 protein kinases, making it closely related to the sea urchin kinome, which has 353 protein kinases. The absence of gene redundancy in some groups of the C. gigas kinome may simplify functional studies of protein kinases. Through data mining of transcriptomes in C. gigas, we identified part of the kinome which may be central during development and may play a role in response to various environmental factors. Overall, this work contributes to a better understanding of key sensing pathways that may be central for adaptation to a highly dynamic marine environment.

PubMed ID: 27231950
PMC ID: PMC4883820
Article link: PLoS One


Genes referenced: cope gsk3a LOC100887844 LOC105440140 LOC115919910 LOC576733 LOC586799 LOC589947 LOC590870


Article Images: [+] show captions
References [+] :
Al Quobaili, CK2 and the regulation of the carbohydrate metabolism. 2012, Pubmed