Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Metabolites
2023 Jun 23;137:. doi: 10.3390/metabo13070783.
Show Gene links
Show Anatomy links
A Mass Spectrometry Database for Sea Cucumber Triterpene Glycosides.
Popov RS
,
Ivanchina NV
,
Silchenko AS
,
Avilov SA
,
Kalinin VI
,
Malyarenko TV
,
Stonik VA
,
Dmitrenok PS
.
???displayArticle.abstract???
Sea cucumber triterpene glycosides are a class of secondary metabolites that possess distinctive chemical structures and exhibit a variety of biological and pharmacological activities. The application of MS-based approaches for the study of triterpene glycosides allows rapid evaluation of the structural diversity of metabolites in complex mixtures. However, the identification of the detected triterpene glycosides can be challenging. The objective of this study is to establish the first spectral library containing the mass spectra of sea cucumber triterpene glycosides using ultraperformance liquid chromatography-quadrupole time-of-flight mass spectrometry. The library contains the electrospray ionization tandem mass spectra and retention times of 191 triterpene glycosides previously isolated from 15 sea cucumber species and one starfish at the Laboratory of the Chemistry of Marine Natural Products of the G.B. Elyakov Pacific Institute of Bioorganic Chemistry. In addition, the chromatographic behavior and some structure-related neutral losses in tandem MS are discussed. The obtained data will accelerate the accurate dereplication of known triterpene glycosides and the annotation of novel compounds, as we demonstrated by the processing of LC-MS/MS data of Eupentacta fraudatrix extract.
Figure 1. Structures of lanostane-type aglycons occurring in sea cucumber triterpene glycosides with 18(20)-lactone (a), 18(16)-lactone (b), and without a lactone cycle (c).
Figure 2. The MS/MS spectrum of the [M−H]− precursor ion of psolusoside C1.
Figure 3. The MS/MS spectrum of the [M−Na]− precursor ion of psolusoside E.
Figure 4. Molecular network of sea cucumber triterpene glycoside spectral library. Nodes were colored according to the number of sulfate groups in molecules.
Figure 5. Molecular networks of the profiled compounds detected in E. fraudatrix extract annotated by the sea cucumber triterpene glycoside library.
Agnès,
Implementation of a MS/MS database for isoquinoline alkaloids and other annonaceous metabolites.
2022, Pubmed
Agnès,
Implementation of a MS/MS database for isoquinoline alkaloids and other annonaceous metabolites.
2022,
Pubmed
Chambers,
A cross-platform toolkit for mass spectrometry and proteomics.
2012,
Pubmed
Fox Ramos,
Collected mass spectrometry data on monoterpene indole alkaloids from natural product chemistry research.
2019,
Pubmed
Griffiths,
Tandem mass spectrometry in the study of fatty acids, bile acids, and steroids.
2003,
Pubmed
Haug,
MetaboLights: a resource evolving in response to the needs of its scientific community.
2020,
Pubmed
Horai,
MassBank: a public repository for sharing mass spectral data for life sciences.
2010,
Pubmed
Kalinin,
Triterpene glycosides of sea cucumbers (Holothuroidea, Echinodermata) as taxonomic markers.
2015,
Pubmed
,
Echinobase
Kang,
Mass spectrometry data on specialized metabolome of medicinal plants used in East Asian traditional medicine.
2022,
Pubmed
Khotimchenko,
Pharmacological Potential of Sea Cucumbers.
2018,
Pubmed
,
Echinobase
Kim,
Triterpene glycosides from sea cucumbers and their biological activities.
2012,
Pubmed
,
Echinobase
Lee,
BMDMS-NP: A comprehensive ESI-MS/MS spectral library of natural compounds.
2020,
Pubmed
Li,
Triterpenoids of marine origin as anti-cancer agents.
2013,
Pubmed
,
Echinobase
Olivier-Jimenez,
A database of high-resolution MS/MS spectra for lichen metabolites.
2019,
Pubmed
Pluskal,
MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.
2010,
Pubmed
Popov,
Application of MS-Based Metabolomic Approaches in Analysis of Starfish and Sea Cucumber Bioactive Compounds.
2022,
Pubmed
,
Echinobase
Popov,
Metabolite Profiling of Triterpene Glycosides of the Far Eastern Sea Cucumber Eupentacta fraudatrix and Their Distribution in Various Body Components Using LC-ESI QTOF-MS.
2017,
Pubmed
,
Echinobase
Shannon,
Cytoscape: a software environment for integrated models of biomolecular interaction networks.
2003,
Pubmed
Silchenko,
Triterpene glycosides from the sea cucumber Eupentacta fraudatrix. Structure and biological action of cucumariosides I1, I3, I4, three new minor disulfated pentaosides.
2013,
Pubmed
,
Echinobase
Silchenko,
Triterpene glycosides from the sea cucumber Eupentacta fraudatrix. Structure and biological action of cucumariosides A1, A3, A4, A5, A6, A12 and A15, seven new minor non-sulfated tetraosides and unprecedented 25-keto, 27-norholostane aglycone.
2012,
Pubmed
,
Echinobase
Silchenko,
Triterpene glycosides from the sea cucumber Eupentacta fraudatrix. Structure and cytotoxic action of cucumariosides A2, A7, A9, A10, an, A13 and A14, seven new minor non-sulfated tetraosides and an aglycone with an uncommon 18-hydroxy group.
2012,
Pubmed
,
Echinobase
Silchenko,
Structures and cytotoxic properties of cucumariosides H₂, H₃ and H₄ from the sea cucumber Eupentacta fraudatrix.
2012,
Pubmed
,
Echinobase
Silchenko,
Structure of cucumariosides H5, H6, H7 and H8, triterpene glycosides from the sea cucumber Eupentacta fraudatrix and unprecedented aglycone with 16,22-epoxy-group.
2011,
Pubmed
,
Echinobase
Smith,
METLIN: a metabolite mass spectral database.
2005,
Pubmed
Sumner,
Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI).
2007,
Pubmed
Wang,
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.
2016,
Pubmed
Willighagen,
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching.
2017,
Pubmed
Wolfender,
Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography-High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and Chemometrics.
2019,
Pubmed