Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
PLoS One
2023 Jan 01;188:e0290305. doi: 10.1371/journal.pone.0290305.
Show Gene links
Show Anatomy links
Genomic characterization of a novel, widely distributed Mycoplasma species "Candidatus Mycoplasma mahonii" associated with the brittlestar Gorgonocephalus chilensis.
Aroh O
,
Liles MR
,
Halanych KM
.
???displayArticle.abstract???
Symbiotic relationships are ubiquitous throughout the world's oceans, yet for many marine organisms, including those in the high latitudes, little is understood about symbiotic associations and functional relationships. From a recently determined genome sequence of a filter-feeding basket star from Argentina, Gorgonocephalus chilensis, we discovered a novel Mycoplasma species with a 796Kb genome (CheckM completeness of 97.9%, G+C content = 30.1%). Similar to other Mycoplasma spp. within Mycoplasmatota, genomic analysis of the novel organism revealed reduced metabolic pathways including incomplete biosynthetic pathways, suggesting an obligate association with their basket star host. Results of 16S rRNA and multi-locus phylogenetic analyses revealed that this organism belonged to a recently characterized non-free-living lineage of Mycoplasma spp. specifically associated with marine invertebrate animals. Thus, the name "Candidatus Mycoplasma mahonii" is proposed for this novel species. Based on 16S rRNA PCR-screening, we found that Ca. M. mahonii also occurs in Gorgonocephalus eucnemis from the Northwest Pacific and other Gorgonocephalus chilensis from Argentinian waters. The level of sequence conservation within Ca. M. mahonii is considerable between widely disparate high-latitude Gorgonocephalus species, suggesting that oceanic dispersal of this microbe may be greater than excepted.
???displayArticle.pubmedLink???
37616244
???displayArticle.link???PLoS One
Aroh,
Genomic characterization of a novel, widely distributed Mycoplasma species "Candidatus Mycoplasma mahonii" associated with the brittlestar Gorgonocephalus chilensis.
2023, Pubmed
Aroh,
Genomic characterization of a novel, widely distributed Mycoplasma species "Candidatus Mycoplasma mahonii" associated with the brittlestar Gorgonocephalus chilensis.
2023,
Pubmed
Aziz,
The RAST Server: rapid annotations using subsystems technology.
2008,
Pubmed
Bano,
Dominance of Mycoplasma in the guts of the Long-Jawed Mudsucker, Gillichthys mirabilis, from five California salt marshes.
2007,
Pubmed
Bekő,
Genotyping Mycoplasma gallisepticum by multilocus sequence typing.
2019,
Pubmed
Ben-Menachem,
The thioredoxin reductase system of mycoplasmas.
1997,
Pubmed
Borukhov,
Bacterial transcription elongation factors: new insights into molecular mechanism of action.
2005,
Pubmed
Boyd,
Sequence, expression, and function of the gene for the nonphosphorylating, NADP-dependent glyceraldehyde-3-phosphate dehydrogenase of Streptococcus mutans.
1995,
Pubmed
Bürki,
Virulence, persistence and dissemination of Mycoplasma bovis.
2015,
Pubmed
Cantalapiedra,
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
2021,
Pubmed
Chambaud,
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis.
2001,
Pubmed
Chaumeil,
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
2019,
Pubmed
Chen,
VFDB: a reference database for bacterial virulence factors.
2005,
Pubmed
Chen,
Genome-Wide Analysis of the First Sequenced Mycoplasma capricolum subsp. capripneumoniae Strain M1601.
2017,
Pubmed
Cheng,
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
2021,
Pubmed
Chopra-Dewasthaly,
Construction of the first shuttle vectors for gene cloning and homologous recombination in Mycoplasma agalactiae.
2005,
Pubmed
Cordova,
Identification of the origin of replication of the Mycoplasma pulmonis chromosome and its use in oriC replicative plasmids.
2002,
Pubmed
Couvin,
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
2018,
Pubmed
Darriba,
jModelTest 2: more models, new heuristics and parallel computing.
2012,
Pubmed
Dijkman,
Development and evaluation of a multi-locus sequence typing scheme for Mycoplasma synoviae.
2016,
Pubmed
Fujikawa,
Structural basis of replication origin recognition by the DnaA protein.
2003,
Pubmed
Gao,
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes.
2008,
Pubmed
Guimaraes,
Complete genome sequence of Mycoplasma suis and insights into its biology and adaption to an erythrocyte niche.
2011,
Pubmed
Ha,
Application of the Whole Genome-Based Bacterial Identification System, TrueBac ID, Using Clinical Isolates That Were Not Identified With Three Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) Systems.
2019,
Pubmed
Hille,
The Biology of CRISPR-Cas: Backward and Forward.
2018,
Pubmed
Himmelreich,
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.
1996,
Pubmed
Holben,
Phylogenetic analysis of intestinal microflora indicates a novel Mycoplasma phylotype in farmed and wild salmon.
2002,
Pubmed
Inamine,
Evidence that UGA is read as a tryptophan codon rather than as a stop codon by Mycoplasma pneumoniae, Mycoplasma genitalium, and Mycoplasma gallisepticum.
1990,
Pubmed
Ipoutcha,
Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes).
2019,
Pubmed
Jaffe,
The complete genome and proteome of Mycoplasma mobile.
2004,
Pubmed
Kanehisa,
KEGG: integrating viruses and cellular organisms.
2021,
Pubmed
Katoh,
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
2013,
Pubmed
Kearse,
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
2012,
Pubmed
Lagesen,
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
2007,
Pubmed
Li,
The complete genome sequence of Mycoplasma bovis strain Hubei-1.
2011,
Pubmed
Luo,
Recent development of Ori-Finder system and DoriC database for microbial replication origins.
2019,
Pubmed
Mackiewicz,
Where does bacterial replication start? Rules for predicting the oriC region.
2004,
Pubmed
Manso-Silván,
Phylogeny and molecular typing of Mycoplasma agalactiae and Mycoplasma bovis by multilocus sequencing.
2012,
Pubmed
Mayor,
Multilocus sequence typing (MLST) of Mycoplasma hyopneumoniae: a diverse pathogen with limited clonality.
2008,
Pubmed
Meier-Kolthoff,
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
2019,
Pubmed
Meier-Kolthoff,
Genome sequence-based species delimitation with confidence intervals and improved distance functions.
2013,
Pubmed
Messer,
The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication.
2002,
Pubmed
Meziti,
Temporal shifts of the Norway lobster (Nephrops norvegicus) gut bacterial communities.
2010,
Pubmed
NULL,
International Code of Nomenclature of Prokaryotes.
2019,
Pubmed
Nakagawa,
Microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant Helicobacter-related taxon.
2017,
Pubmed
,
Echinobase
Neulinger,
Tissue-associated "Candidatus Mycoplasma corallicola" and filamentous bacteria on the cold-water coral Lophelia pertusa (Scleractinia).
2009,
Pubmed
Nguyen,
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
2015,
Pubmed
Papazisi,
The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low).
2003,
Pubmed
Parks,
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
2015,
Pubmed
Parks,
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
2022,
Pubmed
Pilo,
A metabolic enzyme as a primary virulence factor of Mycoplasma mycoides subsp. mycoides small colony.
2005,
Pubmed
Ramírez,
First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov.
2019,
Pubmed
Rasmussen,
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts.
2021,
Pubmed
Razin,
Molecular biology and pathogenicity of mycoplasmas.
1998,
Pubmed
Ronquist,
MrBayes 3: Bayesian phylogenetic inference under mixed models.
2003,
Pubmed
Sayers,
Database resources of the national center for biotechnology information.
2022,
Pubmed
Sayers,
GenBank.
2020,
Pubmed
Sellyei,
Mycoplasma infections in freshwater carnivorous fishes in Hungary.
2021,
Pubmed
Seymour,
Mhp182 (P102) binds fibronectin and contributes to the recruitment of plasmin(ogen) to the Mycoplasma hyopneumoniae cell surface.
2012,
Pubmed
Tocqueville,
Multilocus sequence typing of Mycoplasma hyorhinis strains identified by a real-time TaqMan PCR assay.
2014,
Pubmed
Weisburg,
A phylogenetic analysis of the mycoplasmas: basis for their classification.
1989,
Pubmed
Wolf,
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data.
2004,
Pubmed
Wood,
Improved metagenomic analysis with Kraken 2.
2019,
Pubmed
Yoon,
A large-scale evaluation of algorithms to calculate average nucleotide identity.
2017,
Pubmed
Yoon,
Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.
2017,
Pubmed
Yus,
Impact of genome reduction on bacterial metabolism and its regulation.
2009,
Pubmed
van Kuppeveld,
Genus- and species-specific identification of mycoplasmas by 16S rRNA amplification.
1992,
Pubmed
