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Microorganisms
2023 Feb 03;112:. doi: 10.3390/microorganisms11020391.
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The Epibiotic Microbiota of Wild Caribbean Sea Urchin Spines Is Species Specific.
Rodríguez-Barreras R
,
Dominicci-Maura A
,
Tosado-Rodríguez EL
,
Godoy-Vitorino F
.
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Caribbean sea urchins are marine invertebrates that have experienced a decline over the years. Studies on sea urchins have focused primarily on the microbiome of the coelomic fluid or the gut microbiota. In this study, the epibiota community associated with four wild Caribbean sea urchin species, Lytechinus variegatus, Echinometra lucunter, Tripneustes ventricosus, and Diadema antillarum, was characterized for the first time. Using 57 sea urchin animal samples, we evaluated the influence of animal species, trophic niches, and geographical location on the composition of the epibiotic microbiota. We found significant differences in the bacterial biota among species and trophic niches, but not among geographical locations. L. variegatus exhibited the highest alpha diversity with high dominance of Fusobacteria, Planctomycetes, and Cyanobacteria, whereas T. ventricosus and D. antillarum were dominated by Firmicutes. T. ventricosus inhabiting the seagrass biotope dominated by Thalassia testudinum meadows had mostly Endozoicomonas. In contrast, samples located in the reef (dominated by corals and other reef builders) had a higher abundance of Kistimonas and Photobacterium. Our findings confirm that the epibiotic microbiota is species-specific, but also niche-dependent, revealing the trophic networks emerging from the organic matter being recycled in the seagrass and reef niches. As echinoids are important grazers of benthic communities, their microbiota will likely influence ecosystem processes.
P20 GM103475 NIGMS NIH HHS , 2U54MD007600 Center for Collaborative Research in Minority Health and Health Disparities (RCMI), U54 MD007600 NIMHD NIH HHS
Abarca,
Characterization of the Skin Microbiota of the Cane Toad Rhinella cf. marina in Puerto Rico and Costa Rica.
2017, Pubmed
Abarca,
Characterization of the Skin Microbiota of the Cane Toad Rhinella cf. marina in Puerto Rico and Costa Rica.
2017,
Pubmed
Bartz,
Parendozoicomonas haliclonae gen. nov. sp. nov. isolated from a marine sponge of the genus Haliclona and description of the family Endozoicomonadaceae fam. nov. comprising the genera Endozoicomonas, Parendozoicomonas, and Kistimonas.
2018,
Pubmed
Belkaid,
Dialogue between skin microbiota and immunity.
2014,
Pubmed
Bodmer,
The ecological importance of habitat complexity to the Caribbean coral reef herbivore Diadema antillarum: three lines of evidence.
2021,
Pubmed
,
Echinobase
Bolyen,
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
2019,
Pubmed
Bordenstein,
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes.
2015,
Pubmed
Bouslimani,
Molecular cartography of the human skin surface in 3D.
2015,
Pubmed
Brothers,
Ocean warming alters predicted microbiome functionality in a common sea urchin.
2018,
Pubmed
,
Echinobase
Burge,
Climate change influences on marine infectious diseases: implications for management and society.
2014,
Pubmed
Cabanillas-Terán,
Sargassum blooms in the Caribbean alter the trophic structure of the sea urchin Diadema antillarum.
2019,
Pubmed
,
Echinobase
Caporaso,
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.
2012,
Pubmed
Caporaso,
QIIME allows analysis of high-throughput community sequencing data.
2010,
Pubmed
Chiarello,
Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet.
2018,
Pubmed
Cogen,
Skin microbiota: a source of disease or defence?
2008,
Pubmed
Colston,
Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown.
2016,
Pubmed
Darius,
Toxicological Investigations on the Sea Urchin Tripneustes gratilla (Toxopneustidae, Echinoid) from Anaho Bay (Nuku Hiva, French Polynesia): Evidence for the Presence of Pacific Ciguatoxins.
2018,
Pubmed
,
Echinobase
Ding,
Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host.
2016,
Pubmed
Ellis,
Kistimonas alittae sp. nov., a gammaproteobacterium isolated from the marine annelid Alitta succinea.
2019,
Pubmed
Faddetta,
Composition and geographic variation of the bacterial microbiota associated with the coelomic fluid of the sea urchin Paracentrotus lividus.
2020,
Pubmed
,
Echinobase
Fricker,
What is new and relevant for sequencing-based microbiome research? A mini-review.
2019,
Pubmed
Gajardo,
A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research.
2016,
Pubmed
Godoy-Vitorino,
Reef-Building Corals as a Tool for Climate Change Research in the Genomics Era.
2018,
Pubmed
Godoy-Vitorino,
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows.
2012,
Pubmed
Godoy-Vitorino,
The microbial biosphere of the coral Acropora cervicornis in Northeastern Puerto Rico.
2017,
Pubmed
Gomez,
The mucosal immune system of fish: the evolution of tolerating commensals while fighting pathogens.
2013,
Pubmed
Gonzalez,
Qiita: rapid, web-enabled microbiome meta-analysis.
2018,
Pubmed
Grice,
A diversity profile of the human skin microbiota.
2008,
Pubmed
Hakim,
The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence.
2019,
Pubmed
,
Echinobase
Heberle,
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams.
2015,
Pubmed
Hilpert,
Life by a new decarboxylation-dependent energy conservation mechanism with Na as coupling ion.
1984,
Pubmed
Hird,
Comparative Gut Microbiota of 59 Neotropical Bird Species.
2015,
Pubmed
Holmes,
Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.
2007,
Pubmed
Jackson,
The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome.
2018,
Pubmed
,
Echinobase
Kuczynski,
Using QIIME to analyze 16S rRNA gene sequences from microbial communities.
2012,
Pubmed
Kurahashi,
Endozoicomonas elysicola gen. nov., sp. nov., a gamma-proteobacterium isolated from the sea slug Elysia ornata.
2007,
Pubmed
Larsen,
Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh.
2015,
Pubmed
Lee,
Kistimonas scapharcae sp. nov., isolated from a dead ark clam (Scapharca broughtonii), and emended description of the genus Kistimonas.
2012,
Pubmed
Lessios,
The Great Diadema antillarum Die-Off: 30 Years Later.
2016,
Pubmed
,
Echinobase
Li,
Ambient temperature alters body size and gut microbiota of Xenopus tropicalis.
2020,
Pubmed
McMurdie,
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.
2013,
Pubmed
Moeller,
Roles of the gut microbiota in the adaptive evolution of mammalian species.
2020,
Pubmed
Moreno-Letelier,
Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments.
2011,
Pubmed
Morrow,
Natural volcanic CO2 seeps reveal future trajectories for host-microbial associations in corals and sponges.
2015,
Pubmed
Nakagawa,
Microbiota in the coelomic fluid of two common coastal starfish species and characterization of an abundant Helicobacter-related taxon.
2017,
Pubmed
,
Echinobase
Neave,
Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts.
2017,
Pubmed
Neave,
Whole-genome sequences of three symbiotic endozoicomonas strains.
2014,
Pubmed
Neave,
Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas.
2016,
Pubmed
Pagán-Jiménez,
Characterization of the intestinal microbiota of the sea cucumber Holothuria glaberrima.
2019,
Pubmed
,
Echinobase
Pruesse,
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
2007,
Pubmed
Rodríguez-Barreras,
Trophic niches reflect compositional differences in microbiota among Caribbean sea urchins.
2021,
Pubmed
,
Echinobase
Rodríguez-Barreras,
Understanding trophic relationships among Caribbean sea urchins.
2016,
Pubmed
,
Echinobase
Ross,
The skin microbiome of vertebrates.
2019,
Pubmed
Skowron,
Human Skin Microbiome: Impact of Intrinsic and Extrinsic Factors on Skin Microbiota.
2021,
Pubmed
Suarez,
Seasonal Growth of the Purple Sea Urchin Heliocidaris crassispina Revealed by Sequential Fluorochrome Tagging.
2021,
Pubmed
,
Echinobase
Tandon,
Comparative genomics: Dominant coral-bacterium Endozoicomonas acroporae metabolizes dimethylsulfoniopropionate (DMSP).
2020,
Pubmed
Tarnecki,
Effect of copper sulfate on the external microbiota of adult common snook (Centropomus undecimalis).
2021,
Pubmed
Wada,
A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific.
2020,
Pubmed
,
Echinobase
Yang,
Bacterial Community Associated with Organs of Shallow Hydrothermal Vent Crab Xenograpsus testudinatus near Kuishan Island, Taiwan.
2016,
Pubmed
Zackular,
The gut microbiome modulates colon tumorigenesis.
2013,
Pubmed