Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Funct Integr Genomics
2022 Jun 01;223:317-330. doi: 10.1007/s10142-022-00830-2.
Show Gene links
Show Anatomy links
Genome-wide comparative analysis of DNAJ genes and their co-expression patterns with HSP70s in aestivation of the sea cucumber Apostichopus japonicus.
Gao L, Yuan Z, Li Y, Ma Z.
???displayArticle.abstract???
DNAJ proteins function as co-chaperones of HSP70 and play key roles in cell physiology to promote protein folding and degradation, especially under environmental stress. Based on our previous study on HSP70, a systematic study of DNAJ was performed in sea cucumber Apostichopus japonicus using the transcriptomic and genomic data, identifying 43 AjDNAJ genes, including six AjDNAJA genes, eight AjDNAJB genes, and 29 AjDNAJC genes. Slight expansion and conserved genomic structure were observed using the phylogenetic and syntenic analysis. Differential period-specific and tissue-specific expression patterns of AjDNAJs were observed between adult and juvenile individuals during aestivation. Strong tissue-specific expression correlations between AjDNAJ and AjHSP70 genes were found, indicating that the involvements of AjHSP70IVAs in the aestivation of sea cucumbers were regulated by AjDNAJs. Several key genes with significant expression correlations, such as AjDNAJB4L and AjHSP70IVAs, were suggested to function together under heat stress. Together, these findings provide early insight into the involvement of AjDNAJs in the aestivation and their roles as co-chaperones of AjHSP70s.
Bailey,
MEME SUITE: tools for motif discovery and searching.
2009, Pubmed
Bailey,
MEME SUITE: tools for motif discovery and searching.
2009,
Pubmed Darriba,
ProtTest 3: fast selection of best-fit models of protein evolution.
2011,
Pubmed Delport,
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology.
2010,
Pubmed Dong,
Differential expression of three Paralichthys olivaceus Hsp40 genes in responses to virus infection and heat shock.
2006,
Pubmed Foster,
Time-related expression profiles for heat shock protein gene transcripts (HSP40, HSP70) in the central nervous system of Lymnaea stagnalis exposed to thermal stress.
2015,
Pubmed Gao,
Genome-wide identification of HSP70/110 genes in sea cucumber Apostichopus japonicus and comparative analysis of their involvement in aestivation.
2018,
Pubmed
,
Echinobase Giraud-Billoud,
Antioxidant and molecular chaperone defences during estivation and arousal in the South American apple snail Pomacea canaliculata.
2013,
Pubmed Kumar,
Heat shock protein 40 is necessary for human immunodeficiency virus-1 Nef-mediated enhancement of viral gene expression and replication.
2005,
Pubmed Kumar,
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
2016,
Pubmed Letunic,
SMART 7: recent updates to the protein domain annotation resource.
2012,
Pubmed Li,
Co-expression of heat shock protein (HSP) 40 and HSP70 in Pinctada martensii response to thermal, low salinity and bacterial challenges.
2016,
Pubmed Loong,
Differential gene expression in the liver of the African lungfish, Protopterus annectens, after 6 days of estivation in air.
2012,
Pubmed Malik,
Activation of antioxidant defense during dehydration stress in the African clawed frog.
2009,
Pubmed Malik,
Transcriptional regulation of antioxidant enzymes by FoxO1 under dehydration stress.
2011,
Pubmed Marchler-Bauer,
CDD: NCBI's conserved domain database.
2015,
Pubmed Pesce,
The Plasmodium falciparum heat shock protein 40, Pfj4, associates with heat shock protein 70 and shows similar heat induction and localisation patterns.
2008,
Pubmed Qiu,
The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones.
2006,
Pubmed Ramnanan,
Suppression of Na+/K+-ATPase activity during estivation in the land snail Otala lactea.
2006,
Pubmed Salway,
Rapid upregulation of heart antioxidant enzymes during arousal from estivation in the Giant African snail (Achatina fulica).
2010,
Pubmed Solovyev,
Automatic annotation of eukaryotic genes, pseudogenes and promoters.
2006,
Pubmed Song,
Genome-wide identification of hsp40 genes in channel catfish and their regulated expression after bacterial infection.
2014,
Pubmed Storey,
Aestivation: signaling and hypometabolism.
2012,
Pubmed Sun,
iTRAQ reveals proteomic changes during intestine regeneration in the sea cucumber Apostichopus japonicus.
2017,
Pubmed
,
Echinobase Xu,
Molecular cloning, characterization of Pomacea canaliculata HSP40 and its expression analysis under temperature change.
2019,
Pubmed Yan,
Detection of differential gene expression in brown adipose tissue of hibernating arctic ground squirrels with mouse microarrays.
2006,
Pubmed Zhang,
The oyster genome reveals stress adaptation and complexity of shell formation.
2012,
Pubmed Zhang,
Chaperone proteins and winter survival by a freeze tolerant insect.
2011,
Pubmed Zhang,
The sea cucumber genome provides insights into morphological evolution and visceral regeneration.
2017,
Pubmed
,
Echinobase