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Proc Natl Acad Sci U S A
2018 Jul 03;11527:7069-7074. doi: 10.1073/pnas.1800285115.
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Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus.
Schiebelhut LM, Puritz JB, Dawson MN.
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Standing genetic variation enables or restricts a population''s capacity to respond to changing conditions, including the extreme disturbances expected to increase in frequency and intensity with continuing anthropogenic climate change. However, we know little about how populations might respond to extreme events with rapid genetic shifts, or how population dynamics may influence and be influenced by population genomic change. We use a range-wide epizootic, sea star wasting disease, that onset in mid-2013 and caused mass mortality in Pisaster ochraceus to explore how a keystone marine species responded to an extreme perturbation. We integrated field surveys with restriction site-associated DNA sequencing data to (i) describe the population dynamics of mortality and recovery, and (ii) compare allele frequencies in mature P. ochraceus before the disease outbreak with allele frequencies in adults and new juveniles after the outbreak, to identify whether selection may have occurred. We found P. ochraceus suffered 81% mortality in the study region between 2012 and 2015, and experienced a concurrent 74-fold increase in recruitment beginning in late 2013. Comparison of pre- and postoutbreak adults revealed significant allele frequency changes at three loci, which showed consistent changes across the large majority of locations. Allele frequency shifts in juvenile P. ochraceus (spawned from premortality adults) were consistent with those seen in adult survivors. Such parallel shifts suggest detectable signals of selection and highlight the potential for persistence of this change in subsequent generations, which may influence the resilience of this keystone species to future outbreaks.
Barrett,
Adaptation from standing genetic variation.
2008, Pubmed
Barrett,
Adaptation from standing genetic variation.
2008,
Pubmed Bates,
Effects of temperature, season and locality on wasting disease in the keystone predatory sea star Pisaster ochraceus.
2009,
Pubmed
,
Echinobase Campbell-Staton,
Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard.
2017,
Pubmed Catchen,
Stacks: building and genotyping Loci de novo from short-read sequences.
2011,
Pubmed Charlesworth,
Population genetics from 1966 to 2016.
2017,
Pubmed Colosimo,
Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles.
2005,
Pubmed Danecek,
The variant call format and VCFtools.
2011,
Pubmed de Villemereuil,
Genome scan methods against more complex models: when and how much should we trust them?
2014,
Pubmed Eisenlord,
Ochre star mortality during the 2014 wasting disease epizootic: role of population size structure and temperature.
2016,
Pubmed
,
Echinobase Ellegren,
Determinants of genetic diversity.
2016,
Pubmed Faul,
G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences.
2007,
Pubmed Feder,
Identifying signatures of selection in genetic time series.
2014,
Pubmed Flowers,
The recruitment sweepstakes has many winners: genetic evidence from the sea urchin Strongylocentrotus purpuratus.
2002,
Pubmed
,
Echinobase Foll,
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective.
2008,
Pubmed Foo,
Adaptive capacity of the habitat modifying sea urchin Centrostephanus rodgersii to ocean warming and ocean acidification: performance of early embryos.
2012,
Pubmed
,
Echinobase Fuess,
Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease.
2015,
Pubmed
,
Echinobase Gagnaire,
Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches.
2016,
Pubmed Gagnaire,
Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era.
2015,
Pubmed Gooding,
Elevated water temperature and carbon dioxide concentration increase the growth of a keystone echinoderm.
2009,
Pubmed
,
Echinobase Harley,
Color polymorphism and genetic structure in the sea star Pisaster ochraceus.
2006,
Pubmed
,
Echinobase Hewson,
Densovirus associated with sea-star wasting disease and mass mortality.
2014,
Pubmed
,
Echinobase Janies,
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.
2016,
Pubmed
,
Echinobase Jombart,
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data.
2011,
Pubmed Jurgens,
Patterns of Mass Mortality among Rocky Shore Invertebrates across 100 km of Northeastern Pacific Coastline.
2015,
Pubmed
,
Echinobase Kamvar,
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality.
2015,
Pubmed Kelly,
Limited potential for adaptation to climate change in a broadly distributed marine crustacean.
2012,
Pubmed Kohl,
Decreased Temperature Facilitates Short-Term Sea Star Wasting Disease Survival in the Keystone Intertidal Sea Star Pisaster ochraceus.
2016,
Pubmed
,
Echinobase Lischer,
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs.
2012,
Pubmed Lowry,
Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation.
2017,
Pubmed Lowry,
Responsible RAD: Striving for best practices in population genomic studies of adaptation.
2017,
Pubmed Lynch,
Scaling expectations for the time to establishment of complex adaptations.
2010,
Pubmed Menge,
Sea Star Wasting Disease in the Keystone Predator Pisaster ochraceus in Oregon: Insights into Differential Population Impacts, Recovery, Predation Rate, and Temperature Effects from Long-Term Research.
2016,
Pubmed
,
Echinobase Miner,
Large-scale impacts of sea star wasting disease (SSWD) on intertidal sea stars and implications for recovery.
2018,
Pubmed
,
Echinobase Monaco,
A Dynamic Energy Budget (DEB) model for the keystone predator Pisaster ochraceus.
2014,
Pubmed
,
Echinobase Munday,
Predicting evolutionary responses to climate change in the sea.
2013,
Pubmed Nei,
THE BOTTLENECK EFFECT AND GENETIC VARIABILITY IN POPULATIONS.
1975,
Pubmed Peterson,
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species.
2012,
Pubmed Pritchard,
Adaptation - not by sweeps alone.
2010,
Pubmed Puritz,
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms.
2014,
Pubmed Puritz,
Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences.
2016,
Pubmed Rice,
ANALYZING TABLES OF STATISTICAL TESTS.
1989,
Pubmed Riginos,
Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies.
2016,
Pubmed Sanford,
Local adaptation in marine invertebrates.
2011,
Pubmed Steiner,
Adaptive variation in beach mice produced by two interacting pigmentation genes.
2007,
Pubmed Tishkoff,
Convergent adaptation of human lactase persistence in Africa and Europe.
2007,
Pubmed van Oppen,
Building coral reef resilience through assisted evolution.
2015,
Pubmed Willis,
Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.
2017,
Pubmed Zenger,
A rapid population expansion retains genetic diversity within European rabbits in Australia.
2003,
Pubmed