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ECB-ART-40525
Opt Lett 1999 Dec 01;2423:1681-3. doi: 10.1364/ol.24.001681.
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String data alignment by a spatial coding and moirA technique.

Tanida J .


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A method for string alignment is presented in which a moiré technique is applied to one-dimensional spatial encoding patterns. String alignment, an essential operation in genome analysis, evaluates local similarity between sequences of bases or amino acids. The method uses a simple procedure to provide matching results for not only the same locus but also neighboring loci. Experimental verification shows the effectiveness of the proposed method.

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