Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Proc Natl Acad Sci U S A
2011 Aug 23;10834:14186-91. doi: 10.1073/pnas.1109037108.
Show Gene links
Show Anatomy links
Transphyletic conservation of developmental regulatory state in animal evolution.
Royo JL
,
Maeso I
,
Irimia M
,
Gao F
,
Peter IS
,
Lopes CS
,
D'Aniello S
,
Casares F
,
Davidson EH
,
Garcia-Fernández J
,
Gómez-Skarmeta JL
.
Abstract
Specific regulatory states, i.e., sets of expressed transcription factors, define the gene expression capabilities of cells in animal development. Here we explore the functional significance of an unprecedented example of regulatory state conservation from the cnidarian Nematostella to Drosophila, sea urchin, fish, and mammals. Our probe is a deeply conserved cis-regulatory DNA module of the SRY-box B2 (soxB2), recognizable at the sequence level across many phyla. Transphyletic cis-regulatory DNA transfer experiments reveal that the plesiomorphic control function of this module may have been to respond to a regulatory state associated with neuronal differentiation. By introducing expression constructs driven by this module from any phyletic source into the genomes of diverse developing animals, we discover that the regulatory state to which it responds is used at different levels of the neurogenic developmental process, including patterning and development of the vertebrate forebrain and neurogenesis in the Drosophila optic lobe and brain. The regulatory state recognized by the conserved DNA sequence may have been redeployed to different levels of the developmental regulatory program during evolution of complex central nervous systems.
Argenton,
Ectopic expression and knockdown of a zebrafish sox21 reveal its role as a transcriptional repressor in early development.
2004, Pubmed
Argenton,
Ectopic expression and knockdown of a zebrafish sox21 reveal its role as a transcriptional repressor in early development.
2004,
Pubmed
Buescher,
Formation of neuroblasts in the embryonic central nervous system of Drosophila melanogaster is controlled by SoxNeuro.
2002,
Pubmed
Crémazy,
Sox neuro, a new Drosophila Sox gene expressed in the developing central nervous system.
2000,
Pubmed
Davidson,
An integrated view of precambrian eumetazoan evolution.
2009,
Pubmed
Davidson,
Evolutionary innovation and stability in animal gene networks.
2010,
Pubmed
Davidson,
Gene regulatory networks and the evolution of animal body plans.
2006,
Pubmed
Denes,
Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria.
2007,
Pubmed
Elgar,
Tuning in to the signals: noncoding sequence conservation in vertebrate genomes.
2008,
Pubmed
Erwin,
The evolution of hierarchical gene regulatory networks.
2009,
Pubmed
Gao,
Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution.
2008,
Pubmed
,
Echinobase
Gehring,
Pax 6: mastering eye morphogenesis and eye evolution.
1999,
Pubmed
Hare,
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.
2008,
Pubmed
Hawkins,
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.
2010,
Pubmed
Hayakawa,
Involvement of Hydra achaete-scute gene CnASH in the differentiation pathway of sensory neurons in the tentacles.
2004,
Pubmed
Hennig,
Regulation of photoreceptor gene expression by Crx-associated transcription factor network.
2008,
Pubmed
Herrin,
Alternative adaptive immunity in jawless vertebrates.
2010,
Pubmed
Hibino,
The immune gene repertoire encoded in the purple sea urchin genome.
2006,
Pubmed
,
Echinobase
Hinman,
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.
2007,
Pubmed
,
Echinobase
Holland,
The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
2008,
Pubmed
Livant,
Differential stability of expression of similarly specified endogenous and exogenous genes in the sea urchin embryo.
1991,
Pubmed
,
Echinobase
Lowe,
Anteroposterior patterning in hemichordates and the origins of the chordate nervous system.
2003,
Pubmed
Messier-Solek,
Highly diversified innate receptor systems and new forms of animal immunity.
2010,
Pubmed
Oda-Ishii,
Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis.
2005,
Pubmed
Park,
Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis.
2000,
Pubmed
Pearson,
Multiple transcription factor codes activate epidermal wound-response genes in Drosophila.
2009,
Pubmed
Pennacchio,
In vivo enhancer analysis of human conserved non-coding sequences.
2006,
Pubmed
Peter,
Evolution of gene regulatory networks controlling body plan development.
2011,
Pubmed
Putnam,
The amphioxus genome and the evolution of the chordate karyotype.
2008,
Pubmed
Raible,
Divide et Impera--the midbrain-hindbrain boundary and its organizer.
2004,
Pubmed
Ranade,
Analysis of the Otd-dependent transcriptome supports the evolutionary conservation of CRX/OTX/OTD functions in flies and vertebrates.
2008,
Pubmed
Rastegar,
The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
2008,
Pubmed
Sandberg,
Sox21 promotes the progression of vertebrate neurogenesis.
2005,
Pubmed
Seibert,
Role of en and novel interactions between msh, ind, and vnd in dorsoventral patterning of the Drosophila brain and ventral nerve cord.
2010,
Pubmed
Seipel,
Evolution of striated muscle: jellyfish and the origin of triploblasty.
2005,
Pubmed
Swaroop,
Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
2010,
Pubmed
Tessmar-Raible,
Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution.
2007,
Pubmed
Vavouri,
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans.
2007,
Pubmed
Wang,
Large number of ultraconserved elements were already present in the jawed vertebrate ancestor.
2009,
Pubmed
Woolfe,
Highly conserved non-coding sequences are associated with vertebrate development.
2005,
Pubmed