Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
J R Soc Interface
2022 Aug 10;19193:20220226. doi: 10.1098/rsif.2022.0226.
Show Gene links
Show Anatomy links
Hexagonal Voronoi pattern detected in the microstructural design of the echinoid skeleton.
Perricone V
,
Grun TB
,
Rendina F
,
Marmo F
,
Candia Carnevali MD
,
Kowalewski M
,
Facchini A
,
De Stefano M
,
Santella L
,
Langella C
,
Micheletti A
.
Abstract
Repeated polygonal patterns are pervasive in natural forms and structures. These patterns provide inherent structural stability while optimizing strength-per-weight and minimizing construction costs. In echinoids (sea urchins), a visible regularity can be found in the endoskeleton, consisting of a lightweight and resistant micro-trabecular meshwork (stereom). This foam-like structure follows an intrinsic geometrical pattern that has never been investigated. This study aims to analyse and describe it by focusing on the boss of tubercles-spine attachment sites subject to strong mechanical stresses-in the common sea urchin Paracentrotus lividus. The boss microstructure was identified as a Voronoi construction characterized by 82% concordance to the computed Voronoi models, a prevalence of hexagonal polygons, and a regularly organized seed distribution. This pattern is interpreted as an evolutionary solution for the construction of the echinoid skeleton using a lightweight microstructural design that optimizes the trabecular arrangement, maximizes the structural strength and minimizes the metabolic costs of secreting calcitic stereom. Hence, this identification is particularly valuable to improve the understanding of the mechanical function of the stereom as well as to effectively model and reconstruct similar structures in view of future applications in biomimetic technologies and designs.
Figure 1. . Echinoid test, skeletal plate, and tubercle zone. (a) Paracentrotus lividus test and (b) the extracted interambulacral plate. (c) Illustration of the four tubercle regions analysed: bottom, left, right and top. (d) Illustration of the primary spine tubercle and associated soft tissues (muscle and catch apparatus): (TM) mamelon, (TP) platform, (TB) boss and (TA) areola.
Figure 2. . Tubercle architecture and regions examined. (a) SEM micrograph (top view) of Paracentrotus lividus interambulacral plate showing the primary spine tubercle and its stereom microstructural variability. Three stereom types can be recognized: (1) microperforate, (2) galleried, and (3) labyrinthic. In addition, the mamelon of secondary spines (ms) is also shown. The region topographic reference is underlined by a solid line circle in which the pores (p) and trabeculae (t) are indicated (arrows). (b) Micro-CT scan of tubercle boss subsection extracted by P. lividus interambulacral plate showing (a) transversal, (b) sagittal and (c) coronal views.
Figure 3. . Trabecular analysis of Paracentrotus lividus TB stereom. (a) SEM micrograph binarization, (b) skeletonization of the binarized image, and (c) computation of segment-node configuration.
Figure 4. . Pore analysis of Paracentrotus lividus TB stereom. (a) Stereom binarization, (b) pore identification and (c) computation of the Voronoi model from centroids.
Figure 5. . Voronoi divergence analysis of Paracentrotus lividus TB stereom. (a) Skeletonization of the binarized stereo; (b) computation of the Voronoi model; (c) superimposition of the actual stereom (a) and the Voronoi model (c).
Figure 6. . Voronoi polygonal shape. Planar Voronoi model generated from a seed having (a) four, (b) five, (c) six and (d) seven neighbour seeds.
Figure 7. . Non-metric multidimensional scaling (nMDS) ordination of apical and ambital samples for each plate region. Dimensions k = 2; stress = 0.12. ‘Ap’ and ‘Am’ represent the plate types and stand for apical and ambital plate, respectively; bottom, left, right and top represent the plate regions.
Figure 8. . Divergence trend of the skeleton and Voronoi comparisons. ‘Ap’ and ‘Am’ represent the plate types and stand for apical and ambital plate, respectively; bottom, left, right and top represent the plate regions.
Figure 9. . Histograms of number of neighbour seeds or number of TB Voronoi cell sides. Mean values (±SD) for each plate type sample (Ap = apical plate and Am = ambital plate) among its regions (bottom, left, right and top).
Figure 10. . K function estimation results. The blue line represents the estimation of K(h)−πh2 for apical (Ap2 left) and ambital (Am2 left) plates. The plotted functions (blue lines) indicate that K(h), varying h, is smaller than πh2 and lies below the confidence band (dashed lines) departing from CSR.
Albéric,
Growth and regrowth of adult sea urchin spines involve hydrated and anhydrous amorphous calcium carbonate precursors.
2019, Pubmed,
Echinobase
Albéric,
Growth and regrowth of adult sea urchin spines involve hydrated and anhydrous amorphous calcium carbonate precursors.
2019,
Pubmed
,
Echinobase
Ameye,
Ultrastructural localization of proteins involved in sea urchin biomineralization.
1999,
Pubmed
,
Echinobase
Ben-Tabou de-Leon,
The Evolution of Biomineralization through the Co-Option of Organic Scaffold Forming Networks.
2022,
Pubmed
,
Echinobase
Chen,
Quantitative 3D structural analysis of the cellular microstructure of sea urchin spines (II): Large-volume structural analysis.
2020,
Pubmed
,
Echinobase
Del Castillo,
Catch in the primary spines of the sea urchin Eucidaris tribuloides: a brief review and a new interpretation.
1995,
Pubmed
,
Echinobase
Donnay,
X-ray Diffraction Studies of Echinoderm Plates.
1969,
Pubmed
,
Echinobase
Gibson,
The emergence of geometric order in proliferating metazoan epithelia.
2006,
Pubmed
Gibson,
Biomechanics of cellular solids.
2005,
Pubmed
Gilbert,
Molecular aspects of biomineralization of the echinoderm endoskeleton.
2011,
Pubmed
,
Echinobase
Gorzelak,
²⁶Mg labeling of the sea urchin regenerating spine: Insights into echinoderm biomineralization process.
2011,
Pubmed
,
Echinobase
Gorzelak,
Sea urchin growth dynamics at microstructural length scale revealed by Mn-labeling and cathodoluminescence imaging.
2017,
Pubmed
,
Echinobase
Grun,
Structural design of the echinoid's trabecular system.
2018,
Pubmed
,
Echinobase
Grun,
Structural stress response of segmented natural shells: a numerical case study on the clypeasteroid echinoid Echinocyamus pusillus.
2018,
Pubmed
,
Echinobase
Hayashi,
Surface mechanics mediate pattern formation in the developing retina.
2004,
Pubmed
Hoffmann,
A simple developmental model recapitulates complex insect wing venation patterns.
2018,
Pubmed
Honda,
Geometrical models for cells in tissues.
1983,
Pubmed
Honda,
Description of cellular patterns by Dirichlet domains: the two-dimensional case.
1978,
Pubmed
Huang,
Transition from horizontal expansion to vertical growth in the oyster prismatic layer.
2021,
Pubmed
Khater,
A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods.
2020,
Pubmed
Kołbuk,
Effects of seawater Mg2+ /Ca2+ ratio and diet on the biomineralization and growth of sea urchins and the relevance of fossil echinoderms to paleoenvironmental reconstructions.
2020,
Pubmed
,
Echinobase
Lai,
Profiting from nature: macroporous copper with superior mechanical properties.
2007,
Pubmed
,
Echinobase
Lauer,
Strength, elasticity and the limits of energy dissipation in two related sea urchin spines with biomimetic potential.
2018,
Pubmed
,
Echinobase
Ma,
The grinding tip of the sea urchin tooth exhibits exquisite control over calcite crystal orientation and Mg distribution.
2009,
Pubmed
,
Echinobase
Motokawa,
Coordination between catch connective tissue and muscles through nerves in the spine joint of the sea urchin Diadema setosum.
2015,
Pubmed
,
Echinobase
Moureaux,
Structure, composition and mechanical relations to function in sea urchin spine.
2010,
Pubmed
,
Echinobase
Märkel,
[Polycristalline calcite in sea urchins (Echinodermata, Echinoidea)].
1971,
Pubmed
,
Echinobase
Müter,
Microstructure and micromechanics of the heart urchin test from X-ray tomography.
2015,
Pubmed
,
Echinobase
Perricone,
Constructional design of echinoid endoskeleton: main structural components and their potential for biomimetic applications.
2020,
Pubmed
,
Echinobase
Piovani,
Ultrastructural and molecular analysis of the origin and differentiation of cells mediating brittle star skeletal regeneration.
2021,
Pubmed
,
Echinobase
Seto,
Structure-property relationships of a biological mesocrystal in the adult sea urchin spine.
2012,
Pubmed
,
Echinobase
Smith,
The attachment of collagenous ligament to stereom in primary spines of the sea-urchin, Eucidaris tribuloides.
1990,
Pubmed
,
Echinobase
Smith,
Structural features associated with movement and 'catch' of sea-urchin spines.
1981,
Pubmed
,
Echinobase
Voulgaris,
Mechanical defensive adaptations of three Mediterranean sea urchin species.
2021,
Pubmed
,
Echinobase
Weber,
New porous biomaterials by replication of echinoderm skeletal microstructures.
1971,
Pubmed
,
Echinobase
Weiner,
Organic matrixlike macromolecules associated with the mineral phase of sea urchin skeletal plates and teeth.
1985,
Pubmed
,
Echinobase
Wilkie,
Mutable collagenous tissue: overview and biotechnological perspective.
2005,
Pubmed
,
Echinobase
Wilkie,
Is muscle involved in the mechanical adaptability of echinoderm mutable collagenous tissue?
2002,
Pubmed
,
Echinobase
Yang,
Quantitative 3D structural analysis of the cellular microstructure of sea urchin spines (I): Methodology.
2020,
Pubmed
,
Echinobase
Zachos,
A new computational growth model for sea urchin skeletons.
2009,
Pubmed
,
Echinobase