ECB-ART-49614
Int J Dev Biol
2021 Jan 01;654-5-6:427-437. doi: 10.1387/ijdb.200227dq.
Show Gene links
Show Anatomy links
A roadmap for intestinal regeneration.
Quispe-Parra D
,
Valentín G
,
García-Arrarás JE
.
Abstract
Regeneration of lost or injured organs is an intriguing process in which numerous cellular events take place to form the new structure. Studies of this process during reconstitution of the intestine have been performed in echinoderms, particularly in holothurians. Many cellular events triggered during regeneration have been described using the sea cucumber Holothuria glaberrima as a research model. More recent experiments have targeted the molecular mechanisms behind the process, a task that has been facilitated by the new sequencing technologies now available. In this review, we present studies involving cellular processes and the genes that have been identified to be associated with the early events of gut regeneration. We also present ongoing efforts to perform functional studies necessary to establish the role(s) of the identified genes. A synopsis of the studies is given with the course of the regenerative process established so far.
PubMed ID: 32930367
PMC ID: PMC9503165
Article link: Int J Dev Biol
Grant support: [+]
R15 GM124595 NIGMS NIH HHS , R21 AG057974 NIA NIH HHS , R15 NS081681 NINDS NIH HHS , R15 NS081686 NINDS NIH HHS , Z01 NS001686 Intramural NIH HHS
References [+] :
Bello,
Insights into intestinal regeneration signaling mechanisms.
2020, Pubmed,
Echinobase
Bello, Insights into intestinal regeneration signaling mechanisms. 2020, Pubmed , Echinobase
Ben Khadra, Homeobox genes expressed during echinoderm arm regeneration. 2014, Pubmed , Echinobase
Bergmann, Apoptosis, stem cells, and tissue regeneration. 2010, Pubmed
Boyko, The Eupentacta fraudatrix transcriptome provides insights into regulation of cell transdifferentiation. 2020, Pubmed , Echinobase
Cabrera-Serrano, RGD-containing peptides inhibit intestinal regeneration in the sea cucumber Holothuria glaberrima. 2004, Pubmed , Echinobase
Candelaria, Contribution of mesenterial muscle dedifferentiation to intestine regeneration in the sea cucumber Holothuria glaberrima. 2006, Pubmed , Echinobase
Cowin, Differential effect of wounding on actin and its associated proteins, paxillin and gelsolin, in fetal skin explants. 2003, Pubmed
Dolmatov, Metalloproteinase inhibitor GM6001 delays regeneration in holothurians. 2019, Pubmed , Echinobase
Engler, Matrix elasticity directs stem cell lineage specification. 2006, Pubmed
Galliot, The Hydra model: disclosing an apoptosis-driven generator of Wnt-based regeneration. 2010, Pubmed
García-Arrarás, The mesentery as the epicenter for intestinal regeneration. 2019, Pubmed , Echinobase
García-Arrarás, Echinoderms: potential model systems for studies on muscle regeneration. 2010, Pubmed , Echinobase
García-Arrarás, Cellular mechanisms of intestine regeneration in the sea cucumber, Holothuria glaberrima Selenka (Holothuroidea:Echinodermata). 1998, Pubmed , Echinobase
García-Arrarás, Visceral regeneration in holothurians. 2001, Pubmed , Echinobase
García-Arrarás, Spherulocytes in the echinoderm Holothuria glaberrima and their involvement in intestinal regeneration. 2006, Pubmed , Echinobase
García-Arrarás, Cell dedifferentiation and epithelial to mesenchymal transitions during intestinal regeneration in H. glaberrima. 2011, Pubmed , Echinobase
Hernández-Pasos, Melanotransferrin: New Homolog Genes and Their Differential Expression during Intestinal Regeneration in the Sea Cucumber Holothuria glaberrima. 2017, Pubmed , Echinobase
Huang, Attacking c-Myc: targeted and combined therapies for cancer. 2014, Pubmed
Katoh, WNT signaling pathway and stem cell signaling network. 2007, Pubmed
Kopan, The canonical Notch signaling pathway: unfolding the activation mechanism. 2009, Pubmed
Lamash, Proteases from the regenerating gut of the holothurian Eupentacta fraudatrix. 2013, Pubmed , Echinobase
Martindale, The evolution of metazoan axial properties. 2005, Pubmed
Martinez, Organization of an echinoderm Hox gene cluster. 1999, Pubmed , Echinobase
Mashanov, Active Notch signaling is required for arm regeneration in a brittle star. 2020, Pubmed , Echinobase
Mashanov, Transdifferentiation in holothurian gut regeneration. 2005, Pubmed , Echinobase
Mashanov, Gut regeneration in holothurians: a snapshot of recent developments. 2011, Pubmed , Echinobase
Mashanov, Expression of pluripotency factors in echinoderm regeneration. 2015, Pubmed , Echinobase
Mashanov, Expression of Wnt9, TCTP, and Bmp1/Tll in sea cucumber visceral regeneration. 2012, Pubmed , Echinobase
Mashanov, Myc regulates programmed cell death and radial glia dedifferentiation after neural injury in an echinoderm. 2015, Pubmed , Echinobase
Mashanov, Transcriptomic changes during regeneration of the central nervous system in an echinoderm. 2014, Pubmed , Echinobase
Mashanov, Visceral regeneration in a sea cucumber involves extensive expression of survivin and mortalin homologs in the mesothelium. 2010, Pubmed , Echinobase
Mescher, Regenerative capacity and the developing immune system. 2005, Pubmed
Miao, Extracellular matrix remodeling and matrix metalloproteinases (ajMMP-2 like and ajMMP-16 like) characterization during intestine regeneration of sea cucumber Apostichopus japonicus. 2017, Pubmed , Echinobase
Murray, Myogenesis during holothurian intestinal regeneration. 2004, Pubmed , Echinobase
Méndez, Identification of Hox Gene Sequences in the Sea Cucumber Holothuria glaberrima Selenka (Holothuroidea: Echinodermata). 2000, Pubmed , Echinobase
Münder, Notch-signalling is required for head regeneration and tentacle patterning in Hydra. 2013, Pubmed
Nakamura, Evidence for Notch signaling involvement in retinal regeneration of adult newt. 2007, Pubmed
Nieves-Ríos, The nervous system component of the mesentery of the sea cucumber Holothuria glaberrima in normal and regenerating animals. 2020, Pubmed , Echinobase
Ortiz-Pineda, Gene expression profiling of intestinal regeneration in the sea cucumber. 2009, Pubmed , Echinobase
Quispe-Parra, Transcriptomic analysis of early stages of intestinal regeneration in Holothuria glaberrima. 2021, Pubmed , Echinobase
Quiñones, Extracellular matrix remodeling and metalloproteinase involvement during intestine regeneration in the sea cucumber Holothuria glaberrima. 2002, Pubmed , Echinobase
Ramírez-Gómez, LPS-induced genes in intestinal tissue of the sea cucumber Holothuria glaberrima. 2009, Pubmed , Echinobase
Reddien, BMP signaling regulates the dorsal planarian midline and is needed for asymmetric regeneration. 2007, Pubmed
Rojas-Cartagena, Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima. 2007, Pubmed , Echinobase
San Miguel-Ruiz, Common cellular events occur during wound healing and organ regeneration in the sea cucumber Holothuria glaberrima. 2007, Pubmed , Echinobase
Santiago, Serum amyloid A protein in an echinoderm: its primary structure and expression during intestinal regeneration in the sea cucumber Holothuria glaberrima. 2000, Pubmed , Echinobase
Sun, RNA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus. [corrected]. 2013, Pubmed , Echinobase
Suárez-Castillo, Ependymin, a gene involved in regeneration and neuroplasticity in vertebrates, is overexpressed during regeneration in the echinoderm Holothuria glaberrima. 2004, Pubmed , Echinobase
Takahashi, Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. 2006, Pubmed
Tang, The roles and regulation of the actin cytoskeleton, intermediate filaments and microtubules in smooth muscle cell migration. 2017, Pubmed
Toofan, Role of the bone morphogenic protein pathway in developmental haemopoiesis and leukaemogenesis. 2016, Pubmed
Tossas, Temporal and spatial analysis of enteric nervous system regeneration in the sea cucumber Holothuria glaberrima. 2014, Pubmed , Echinobase
Walton, Genomics and expression profiles of the Hedgehog and Notch signaling pathways in sea urchin development. 2006, Pubmed , Echinobase
Wenemoser, A molecular wound response program associated with regeneration initiation in planarians. 2012, Pubmed
Wu, Cloning and expression analysis of the gene encoding fibrinogen-like protein A, a novel regeneration-related protein from Apostichopus japonicus. 2014, Pubmed , Echinobase
Yen, The gastrointestinal tract stem cell niche. 2006, Pubmed
Yu, BMP signaling induces digit regeneration in neonatal mice. 2010, Pubmed
Yuan, Wnt Signaling Pathway Linked to Intestinal Regeneration via Evolutionary Patterns and Gene Expression in the Sea Cucumber Apostichopus japonicus. 2019, Pubmed , Echinobase
Zakany, The role of Hox genes during vertebrate limb development. 2007, Pubmed
Zhang, The sea cucumber genome provides insights into morphological evolution and visceral regeneration. 2017, Pubmed , Echinobase
Zhao, Notch signaling regulates cardiomyocyte proliferation during zebrafish heart regeneration. 2014, Pubmed