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Mitochondrial DNA B Resour
2021 Jan 01;68:2393-2395. doi: 10.1080/23802359.2021.1951132.
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The first mitochondrial genome of a South America parthenogenetic lizard (Squamata: Gymnophthalmidae).
Brunes TO
,
Lyra ML
,
Maldonado JA
,
Pellegrino KCM
,
Rodrigues MT
,
Fujita MK
.
Abstract
The mitogenome of the South American parthenogenetic lizard Loxopholis percarinatum Müller, 1923 (Squamata: Gymnophthalmidae), a uni-bisexual species complex, was recovered for three individuals from Rio Negro region, Amazonas, Brazil. The content and order of genes are typical for vertebrate mitochondrial genomes, and we recovered 13 protein-coding genes, 22 tRNA, and two rRNA (12S and 16S), in addition to partial fragments of the Control Region. A maximum likelihood phylogenetic analysis with mitogenomes of selected lizard families recovered L. percarinatum with Iphisa elegans Gray, 1851, the only other Gymnophthalmidae species available in GenBank.
Bolger,
Trimmomatic: a flexible trimmer for Illumina sequence data.
2014, Pubmed
Bolger,
Trimmomatic: a flexible trimmer for Illumina sequence data.
2014,
Pubmed
Brunes,
Not always young: The first vertebrate ancient origin of true parthenogenesis found in an Amazon leaf litter lizard with evidence of mitochondrial haplotypes surfing on the wave of a range expansion.
2019,
Pubmed
,
Echinobase
Fujita,
Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae).
2007,
Pubmed
Glenn,
Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext).
2019,
Pubmed
Goicoechea,
Molecular systematics of teioid lizards (Teioidea/Gymnophthalmoidea: Squamata) based on the analysis of 48 loci under tree-alignment and similarity-alignment.
2016,
Pubmed
Hahn,
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.
2013,
Pubmed
Katoh,
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
2002,
Pubmed
Katoh,
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
2013,
Pubmed
Meng,
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.
2019,
Pubmed
Sambrook,
Purification of nucleic acids by extraction with phenol:chloroform.
2006,
Pubmed
Stamatakis,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
2014,
Pubmed
Vacher,
The complete mitochondrial genome of Iphisa elegans (Reptilia: Squamata: Gymnophthalmidae).
2020,
Pubmed
