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Mitochondrial DNA B Resour
2019 Sep 20;42:3130-3132. doi: 10.1080/23802359.2019.1666676.
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Complete mitochondrial genome of the sea star Archaster typicus (Asteroidea: Archasteridae).
Quek ZBR
,
Chang JJM
,
Ip YCA
,
Huang D
.
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The complete mitochondrial genome of the widespread and common Indo-Pacific sea star Archaster typicus has been sequenced in this study. The mitogenome is 16,230 base pairs (bp) in length, with 13 protein coding genes (PCGs), 22 tRNAs and 2 rRNAs. Gene order of its PCGs and rRNAs matches those of nine other asteroid taxa included for comparison in this study, and it has a similar nucleotide composition of 33.08% A, 26.38% T, 25.53% C and 15.01% G nucleotides. Phylogenetic analyses place A. typicus as the sister group to Acanthaster spp., consistent with previous inferences.
Figure 1. Maximum likelihood phylogeny of Asteroidea with Echinodea as outgroup. Bootstrap support and posterior probability values are shown adjacent to each node.
Bankevich,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
2012, Pubmed
Bankevich,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
2012,
Pubmed
Bernt,
MITOS: improved de novo metazoan mitochondrial genome annotation.
2013,
Pubmed
Bolger,
Trimmomatic: a flexible trimmer for Illumina sequence data.
2014,
Pubmed
Chan,
Distinct Size and Distribution Patterns of the Sand-sifting Sea Star, Archaster typicus, in an Urbanised Marine Environment.
2018,
Pubmed
,
Echinobase
Hahn,
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.
2013,
Pubmed
Huang,
CAP3: A DNA sequence assembly program.
1999,
Pubmed
Katoh,
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
2013,
Pubmed
Mah,
Global diversity and phylogeny of the Asteroidea (Echinodermata).
2012,
Pubmed
,
Echinobase
Matsubara,
Close relationship between Asterina and Solasteridae (Asteroidea) supported by both nuclear and mitochondrial gene molecular phylogenies.
2004,
Pubmed
,
Echinobase
Ronquist,
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.
2012,
Pubmed
Stamatakis,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
2014,
Pubmed
Yasuda,
Complete mitochondrial genome sequences for Crown-of-thorns starfish Acanthaster planci and Acanthaster brevispinus.
2006,
Pubmed
,
Echinobase
