Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
J Microbiol
2014 Oct 01;5210:819-24. doi: 10.1007/s12275-014-4136-7.
Show Gene links
Show Anatomy links
Citrimicrobium luteum gen. nov., sp. nov., aerobic anoxygenic phototrophic bacterium isolated from the gut of a sea cucumber Stichopus japonicus.
Jung HJ
,
Cha IT
,
Yim KJ
,
Song HS
,
Cho K
,
Kim D
,
Lee HW
,
Lee JK
,
Seo MJ
,
Roh SW
,
Lee SJ
.
Abstract
A Gram-stain negative, yellow-pigmented, motile, pleomorphic bacterium, designated strain CBA4602(T), was isolated from the gut of the sea cucumber Stichopus japonicus, which was collected from Jeju Island in the Republic of Korea. In a phylogenetic analysis based on the 16S rRNA gene, strain CBA4602(T) belonged to the order Sphingomonadales in the class Alphaproteobacteria. The 16S rRNA gene sequence similarity between strain CBA4602(T) and ''Citromicrobium bathyomarinum'' JF-1, the most closely related strain having nonvalidly published name, was 98.4%, followed by 95.2-96.7% identities with sequence of the other closest strains in the genus Erythrobacter. Strain CBA4602(T) had bacteriochlorophyll a and carotenoids. Strain CBA4602(T) grew in 0-10% (w/v) NaCl, at 10-42°C and pH 6.0-8.0, with optimal growth in 1-2% NaCl, at 30-37°C and pH 7.0. Strain CBA4602(T) was positive for catalase and oxidase activities and was able to hydrolyse gelatine and Tween 20 and 40, but not starch, Tween 80 or L-tyrosine. The G+C content of genomic DNA from strain CBA4602(T) was 68.0 mol% and Q-10 was the major detected isoprenoid quinone. The polar lipids were three unidentified phospholipids, three unidentified glycolipids, and two unidentified lipids. The dominant fatty acids were anteiso-C15:0, C16:0, anteiso-C17:0 and C18:0. As considering the current taxonomic status of the genus ''Citromicrobium'' and polyphasic taxonomic analyses, strain CBA4602(T) represents a novel genus and species. The name Citrimicrobium luteum is proposed for the type strain CBA4602(T) (=KACC 17668(T) =JCM 19530(T)).
Béjà,
Unsuspected diversity among marine aerobic anoxygenic phototrophs.
2002, Pubmed
Béjà,
Unsuspected diversity among marine aerobic anoxygenic phototrophs.
2002,
Pubmed
Cha,
Marinoscillum luteum sp. nov., isolated from marine sediment.
2013,
Pubmed
Collins,
Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication.
1981,
Pubmed
Denner,
Erythrobacter citreus sp. nov., a yellow-pigmented bacterium that lacks bacteriochlorophyll a, isolated from the western Mediterranean Sea.
2002,
Pubmed
DITTMER,
A SIMPLE, SPECIFIC SPRAY FOR THE DETECTION OF PHOSPHOLIPIDS ON THIN-LAYER CHROMATOGRAMS.
1964,
Pubmed
Fan,
Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat.
2011,
Pubmed
Felsenstein,
Evolutionary trees from DNA sequences: a maximum likelihood approach.
1981,
Pubmed
González,
Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community.
1997,
Pubmed
Jeong,
Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat.
2013,
Pubmed
Jung,
Erythrobacter marinus sp. nov., isolated from seawater.
2012,
Pubmed
Kaiser,
LC-MS method for screening unknown microbial carotenoids and isoprenoid quinones.
2012,
Pubmed
Kim,
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.
2012,
Pubmed
Kumar,
Altererythrobacter indicus sp. nov., isolated from wild rice (Porteresia coarctata Tateoka).
2008,
Pubmed
Lee,
Blastopirellula cremea sp. nov., isolated from a dead ark clam.
2013,
Pubmed
Mesbah,
Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA.
1989,
Pubmed
Nagashima,
Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria.
1997,
Pubmed
Park,
Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater.
2011,
Pubmed
Pruesse,
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
2012,
Pubmed
Roh,
Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.
2008,
Pubmed
Roh,
Gillisia marina sp. nov., from seashore sand, and emended description of the genus Gillisia.
2013,
Pubmed
Saitou,
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
1987,
Pubmed
Subhash,
Erythrobacter odishensis sp. nov. and Pontibacter odishensis sp. nov. isolated from dry soil of a solar saltern.
2013,
Pubmed
Tamura,
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
2011,
Pubmed
Waidner,
Diversity and distribution of ecotypes of the aerobic anoxygenic phototrophy gene pufM in the Delaware estuary.
2008,
Pubmed
Wu,
Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment.
2014,
Pubmed
Wu,
Erythrobacter pelagi sp. nov., a member of the family Erythrobacteraceae isolated from the Red Sea.
2012,
Pubmed
Xu,
Erythrobacter nanhaisediminis sp. nov., isolated from marine sediment of the South China Sea.
2010,
Pubmed
Xue,
Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter.
2012,
Pubmed
Yim,
Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment.
2014,
Pubmed
Yoon,
Erythrobacter aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea.
2004,
Pubmed
Yoon,
Porphyrobacter dokdonensis sp. nov., isolated from sea water.
2006,
Pubmed
Yoon,
Erythrobacter seohaensis sp. nov. and Erythrobacter gaetbuli sp. nov., isolated from a tidal flat of the Yellow Sea in Korea.
2005,
Pubmed
Yoon,
Erythrobacter jejuensis sp. nov., isolated from seawater.
2013,
Pubmed
Yurkov,
Citromicrobium bathyomarinum, a novel aerobic bacterium isolated from deep-sea hydrothermal vent plume waters that contains photosynthetic pigment-protein complexes.
1999,
Pubmed
Yurkov,
Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.
1994,
Pubmed